View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_30 (Length: 340)
Name: NF0545_low_30
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 1532385 - 1532227
Alignment:
| Q |
29 |
aattaaaattccaagtccaattcttcaatgatctcaagttcattcggaggtattttagacactttatcttcagctcgccattggctatcagtaattaaat |
128 |
Q |
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| T |
1532385 |
aattaaaattc-aagtccaattcttcaatgatctcaagttcattcggaggtattttagacactttatcttcagctcaccattggctatcagtaattaaat |
1532287 |
T |
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| Q |
129 |
aaatttcttaaacaatatttattatcacacttaacattaatattttcattagagtcaaga |
188 |
Q |
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| T |
1532286 |
aaatttcttaaacaatatttattatcacacttaacattaatattttcattagagtcaaga |
1532227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 1532202 - 1532056
Alignment:
| Q |
187 |
gatactacttttttgcaacgggttaatataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaatc |
286 |
Q |
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| T |
1532202 |
gatactacttttttgcaacgggttaatataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagtactatgaatc |
1532103 |
T |
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| Q |
287 |
gacgagtacattagctatataccccctggcataccaaattcatctca |
333 |
Q |
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| T |
1532102 |
gacgagtacattagctatataccccctggcataccaaattcttctca |
1532056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 1536907 - 1536853
Alignment:
| Q |
134 |
tcttaaacaatatttattatcacacttaacattaatattttcattagagtcaaga |
188 |
Q |
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| T |
1536907 |
tcttaaacaacatttatcatcatacttgacattaatattttcatcagagtcaaga |
1536853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 1537052 - 1536991
Alignment:
| Q |
29 |
aattaaaattccaagtccaattcttcaatgatctcaagttcattcggaggtattttagacact |
91 |
Q |
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| T |
1537052 |
aattaaaat-ccaagtccaattcttcaatgatcctaagttcatttagaggcattttagacact |
1536991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 41486369 - 41486292
Alignment:
| Q |
213 |
tataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaatcgacg |
290 |
Q |
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| T |
41486369 |
tataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacg |
41486292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 41488978 - 41488910
Alignment:
| Q |
213 |
tataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactat |
281 |
Q |
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| T |
41488978 |
tataatccttctacttgtttgcaatattaagatagctcactatacttaattaaatagtactagcactat |
41488910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 41487228 - 41487165
Alignment:
| Q |
221 |
ttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaa |
284 |
Q |
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| T |
41487228 |
ttctacttgtttgcaatattaagatagctcactatacttaattaaatagtactagcactatgaa |
41487165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 41488080 - 41488038
Alignment:
| Q |
242 |
agatagcttagtatacttaattagatagtactagcactatgaa |
284 |
Q |
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|||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
41488080 |
agatagctcactatacttaattaaatagtactagcactatgaa |
41488038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 41489790 - 41489748
Alignment:
| Q |
242 |
agatagcttagtatacttaattagatagtactagcactatgaa |
284 |
Q |
| |
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|||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
41489790 |
agatagctcactatacttaattaaatagtactagcactatgaa |
41489748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 36236159 - 36236220
Alignment:
| Q |
213 |
tataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtacta |
274 |
Q |
| |
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|||||| |||||||||||||||||| | ||||| ||| ||||||||||||| |||||||| |
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| T |
36236159 |
tataatccttctacttttttgcaatattaagatatattactatacttaattaggtagtacta |
36236220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 10850764 - 10850697
Alignment:
| Q |
213 |
tataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcacta |
280 |
Q |
| |
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|||||| ||||||| |||||||||| | |||||||||| ||||||||||||| || |||||| |||| |
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| T |
10850764 |
tataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtacta |
10850697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 10878278 - 10878211
Alignment:
| Q |
213 |
tataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcacta |
280 |
Q |
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|||||| ||||||| |||||||||| | |||||||||| ||||||||||||| || |||||| |||| |
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| T |
10878278 |
tataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtacta |
10878211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 32964605 - 32964509
Alignment:
| Q |
190 |
actacttttttgcaacgggttaatataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaatc |
286 |
Q |
| |
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|||| ||| ||||| |||| || |||| ||||||||||||||| |||| | ||||||||| |||||||||||| |||||| || |||| ||||| |
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| T |
32964605 |
actagtttgttgcagcgggctactatacttcttctacttttttacaatattaagatagcttgcaatacttaattaggtagtaccagtactacgaatc |
32964509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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