View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_32 (Length: 334)
Name: NF0545_low_32
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 108 - 290
Target Start/End: Complemental strand, 13086908 - 13086729
Alignment:
| Q |
108 |
tatgtacaataagtaattagtttactaataacaccaccctcatgtatggttattagtggggtgctttttaacagcttttctcagttcgggacaaaatcgt |
207 |
Q |
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| T |
13086908 |
tatgtacaataagtaattattttactaataacaccaccctcatgtatg---attagtggggtgctttttaacagcttttctcagttcgggacaaaatcgt |
13086812 |
T |
|
| Q |
208 |
tggatatttcttcgctatatatagcaatggcctgcattttttcacagtttttggacaaaagttaaagttacgtgtgccaaaaa |
290 |
Q |
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| T |
13086811 |
tggatatttcttcgctatatatagcaatggcctgcattttttcacagtttatgtacaaaagttaaagttacgtgtgccaaaaa |
13086729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 334
Target Start/End: Complemental strand, 13086708 - 13086677
Alignment:
| Q |
303 |
accatatacaactaacgagaccttcaatcgtt |
334 |
Q |
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| T |
13086708 |
accatatacaactaacgagaccttcaatcgtt |
13086677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 16800900 - 16801022
Alignment:
| Q |
112 |
tacaataagtaattagtttactaataacaccaccctcatgtatggttattagtggggtgctttttaacagcttttctcagttcgggacaaaatcgttgga |
211 |
Q |
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||||||||||||||| |||||||| |||||||| |||||||||||| | | ||||| |||||||| ||| |||| ||||||||| ||| |||||||| |
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| T |
16800900 |
tacaataagtaattattttactaa---caccacccccatgtatggttagtgg--gggtggtttttaacggctgttcttagttcgggataaattcgttgga |
16800994 |
T |
|
| Q |
212 |
tatttcttcgctatatatagcaatggcc |
239 |
Q |
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| T |
16800995 |
tatttcttcgctgtatattgcaatggcc |
16801022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 46922437 - 46922555
Alignment:
| Q |
117 |
taagtaattagtttactaataacaccaccctcatgtatggttattagtggggtgctttttaacagcttttctcagttcgggacaaaatcgttggatattt |
216 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||| || |||||||||| |
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| T |
46922437 |
taagtaattattttactaataacaccacccccatgtatgg---ttagtggggggctttttaacagccgagaacagctcgggacaatttcattggatattt |
46922533 |
T |
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| Q |
217 |
cttcgctatatatagcaatggcc |
239 |
Q |
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|||||| ||||||||||||||| |
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| T |
46922534 |
-ttcgctgtatatagcaatggcc |
46922555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 50933738 - 50933803
Alignment:
| Q |
160 |
ttagtggggtgctttttaacagcttttctcagttcgggacaaaatcgttggatatttcttcgctata |
226 |
Q |
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||||||||| ||||||||| ||||| |||| ||||||| ||| ||| ||||||||||||||||||| |
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| T |
50933738 |
ttagtgggg-gctttttaatagcttctctcttttcgggataaattcgctggatatttcttcgctata |
50933803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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