View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0545_low_33 (Length: 332)
Name: NF0545_low_33
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_33 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 326
Target Start/End: Complemental strand, 11009735 - 11009426
Alignment:
| Q |
30 |
ggtgatgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgaca |
129 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11009735 |
ggtgatgttgaacatcaagagtcatgttcaagaaggtgcggtgttcatagcatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgaca |
11009636 |
T |
|
| Q |
130 |
aaaggtacatcctaccatgtgaggacaataaccaattgattttgtactatgaatt------------tggaaaatactatgtacaatcaattaattacaa |
217 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11009635 |
aaaggtacatcctatcatgtgaggacaataaccaattgattttgtactatgaatttgaagaataccatggaaaatactatgtacaatcaattaattacaa |
11009536 |
T |
|
| Q |
218 |
caacttcaccatacgactattggatttcaatcttgcttcttctaataattccatcccttcttattattctttagggc-ttataatttcagttctaatttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11009535 |
caacttcaccatacgactattggatttcaatcttgcttcttctaataattccatcccttcttattattctttagggctttataatttcagttctaatttc |
11009436 |
T |
|
| Q |
317 |
ttcatctcac |
326 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11009435 |
ttcacctcac |
11009426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 314
Target Start/End: Complemental strand, 11035134 - 11034851
Alignment:
| Q |
35 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaagg |
134 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||| || | ||||| ||| ||||| |
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|
| T |
11035134 |
tgatgaacaccaagactcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaagaatgtggcgacgaaagg |
11035035 |
T |
|
| Q |
135 |
tacatcctaccatgtgaggacaataaccaattgattttgtactatga---atttggaaaatactatgtacaatcaattaattacaacaacttcaccatac |
231 |
Q |
| |
|
|||| |||| ||||||||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11035034 |
tacaacctatcatgtgaggacaacaatcaattgattttgtaccatgattcatttggaaaatactatgtacaatcaattaattacaacaacttcaccatac |
11034935 |
T |
|
| Q |
232 |
gactattggatttcaatcttgcttcttctaataattccatcccttcttattattctttagggc-ttataatttcagttctaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11034934 |
gactattggatttcaatcttgcttcttctaataatttcatccctccttattattctttagggctttataatttcagttctaatt |
11034851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 10988595 - 10988379
Alignment:
| Q |
35 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaagg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
10988595 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaatagg |
10988496 |
T |
|
| Q |
135 |
tacatcctaccatgtgaggacaataaccaattgattttgtactatg---aatttggaaaatactatgtacaatcaattaattacaacaacttcaccatac |
231 |
Q |
| |
|
|||| |||| ||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
10988495 |
tacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatcc |
10988396 |
T |
|
| Q |
232 |
gactattggatttcaat |
248 |
Q |
| |
|
||||| | |||||||| |
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|
| T |
10988395 |
aactatcgtatttcaat |
10988379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 11019763 - 11019547
Alignment:
| Q |
35 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaagg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
11019763 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaatagg |
11019664 |
T |
|
| Q |
135 |
tacatcctaccatgtgaggacaataaccaattgattttgtactatg---aatttggaaaatactatgtacaatcaattaattacaacaacttcaccatac |
231 |
Q |
| |
|
|||| |||| ||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
11019663 |
tacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttaccatcc |
11019564 |
T |
|
| Q |
232 |
gactattggatttcaat |
248 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
11019563 |
aactatcgtatttcaat |
11019547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 11002789 - 11003004
Alignment:
| Q |
36 |
gatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaaggt |
135 |
Q |
| |
|
|||||||||||||| ||||| || | ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11002789 |
gatgaacaacaagattcatgctctacaaggtgcggtgaccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaaaaggt |
11002888 |
T |
|
| Q |
136 |
acatcctaccatgtgaggacaataaccaattgattttgtactatg---aatttggaaaatactatgtacaatcaattaattacaacaacttcaccatacg |
232 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
11002889 |
acatcttatcatgtgaggacaacaaccaattgattttgtactatggttcatttggaaaatactatgtacaatcaattaattacaataacttcactatacg |
11002988 |
T |
|
| Q |
233 |
actattggatttcaat |
248 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11002989 |
tctattggatttcaat |
11003004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 10999812 - 11000027
Alignment:
| Q |
36 |
gatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaaggt |
135 |
Q |
| |
|
|||||||||||||||||||| || | |||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
10999812 |
gatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaataggt |
10999911 |
T |
|
| Q |
136 |
acatcctaccatgtgaggacaataaccaattgattttgtactatg---aatttggaaaatactatgtacaatcaattaattacaacaacttcaccatacg |
232 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
10999912 |
acatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaacaactttaccatacg |
11000011 |
T |
|
| Q |
233 |
actattggatttcaat |
248 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
11000012 |
attattggatttcaat |
11000027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 10922282 - 10922057
Alignment:
| Q |
35 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaagg |
134 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10922282 |
tgatgaacaccaagagtcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaaaagtgtggtgacaaaaga |
10922183 |
T |
|
| Q |
135 |
tacatcctaccatgtgaggacaataaccaattgattttgtactatgaatttggaaaatac------------tatgtacaatcaattaattacaacaact |
222 |
Q |
| |
|
|||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10922182 |
tacatcttatcatgtgaggacaacaaccagttgattttgtactatgaatttggaaaaaaccatggtaaattttatgtacaatcaattaattacaacaact |
10922083 |
T |
|
| Q |
223 |
tcaccatacgactattggatttcaat |
248 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
10922082 |
acactatacgactattggatgtcaat |
10922057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 10905683 - 10905492
Alignment:
| Q |
61 |
gaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaaggtacatcctaccatgtgaggacaataa |
160 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||| |||||||| || | ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
10905683 |
gaaggtgcggtgtccatagcatcagccaccctttccggttgaatgacagtcccaaacactgtggtgacaaaaggtacatcttatcatgtgaggacag--- |
10905587 |
T |
|
| Q |
161 |
ccaattgattttgtactatgaat---ttggaaaatactatgtacaatcaattaattacaacaacttcaccatacgactattggatttcaatcttg |
252 |
Q |
| |
|
|||||| |||||| |||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
10905586 |
ccaattaattttgaactatggatcatttggaaaatattatgtacaatcaattaattacaacaatttcaccatacggctattggatttcaatcttg |
10905492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 10975773 - 10975546
Alignment:
| Q |
35 |
tgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaagg |
134 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| || | || ||||||| ||| |
|
|
| T |
10975773 |
tgatgaacaccatgagtcatgttctggaagttgcggtgtccataacatcagccaccctttccggctgaaagacagtcccaaacactg--gtgacaagagg |
10975676 |
T |
|
| Q |
135 |
tacatcctaccatgtgaggacaataaccaattgattttgtactatgaatttggaaaatac------------tatgtacaatcaattaattacaacaact |
222 |
Q |
| |
|
|| ||| || ||||||||||||| ||||||||||| ||||||||| || |||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
10975675 |
tatatcttatcatgtgaggacaacaaccaattgatcttgtactataaagttgggaaatacaccggaaaatattatgtacaatcaattaattacaacaact |
10975576 |
T |
|
| Q |
223 |
tcaccatacgactattggatttcaatcttg |
252 |
Q |
| |
|
| |||||||| ||||||||||||||||||| |
|
|
| T |
10975575 |
ttaccatacggctattggatttcaatcttg |
10975546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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