View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_low_34 (Length: 331)

Name: NF0545_low_34
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_low_34
NF0545_low_34
[»] chr5 (12 HSPs)
chr5 (55-232)||(16967370-16967549)
chr5 (60-232)||(29499669-29499843)
chr5 (61-237)||(16594266-16594443)
chr5 (92-187)||(5899824-5899923)
chr5 (89-233)||(10008408-10008550)
chr5 (155-238)||(21575631-21575714)
chr5 (198-232)||(16967509-16967543)
chr5 (73-232)||(25603560-25603723)
chr5 (166-232)||(26009134-26009199)
chr5 (183-232)||(13739566-13739615)
chr5 (133-181)||(25255331-25255379)
chr5 (133-181)||(25319121-25319169)
[»] chr1 (24 HSPs)
chr1 (60-230)||(27260603-27260775)
chr1 (61-232)||(38289579-38289743)
chr1 (124-232)||(5466227-5466337)
chr1 (80-232)||(29936767-29936921)
chr1 (112-232)||(38762208-38762330)
chr1 (151-232)||(48872716-48872797)
chr1 (133-228)||(36775185-36775280)
chr1 (57-143)||(48872587-48872674)
chr1 (73-200)||(46039918-46040050)
chr1 (61-187)||(16583000-16583128)
chr1 (151-232)||(35414468-35414549)
chr1 (151-232)||(46859528-46859609)
chr1 (127-225)||(42824525-42824623)
chr1 (197-232)||(27260739-27260774)
chr1 (166-232)||(4604724-4604790)
chr1 (190-240)||(38289571-38289621)
chr1 (190-232)||(48872591-48872633)
chr1 (112-161)||(25302609-25302658)
chr1 (151-232)||(49660065-49660146)
chr1 (133-186)||(49804874-49804927)
chr1 (118-187)||(702424-702495)
chr1 (121-158)||(8905793-8905832)
chr1 (133-161)||(11121560-11121588)
chr1 (57-93)||(48872765-48872801)
[»] chr4 (15 HSPs)
chr4 (60-232)||(33085166-33085338)
chr4 (58-230)||(50645431-50645602)
chr4 (92-232)||(25467847-25467973)
chr4 (101-246)||(23719399-23719546)
chr4 (112-232)||(54342839-54342961)
chr4 (89-200)||(51734556-51734672)
chr4 (179-232)||(54128172-54128225)
chr4 (57-95)||(33085304-33085342)
chr4 (89-139)||(54128085-54128135)
chr4 (197-232)||(50645434-50645469)
chr4 (92-200)||(54909358-54909471)
chr4 (86-214)||(3698342-3698474)
chr4 (190-232)||(4272460-4272502)
chr4 (124-187)||(7146069-7146134)
chr4 (54-95)||(25467939-25467980)
[»] chr6 (8 HSPs)
chr6 (61-232)||(28982533-28982706)
chr6 (61-232)||(34383750-34383925)
chr6 (89-232)||(354308-354450)
chr6 (61-232)||(5456742-5456917)
chr6 (89-215)||(2204312-2204442)
chr6 (89-232)||(10729600-10729750)
chr6 (89-176)||(23632585-23632676)
chr6 (112-161)||(11742948-11742997)
[»] chr2 (11 HSPs)
chr2 (237-320)||(41830934-41831017)
chr2 (123-232)||(41317265-41317376)
chr2 (60-232)||(4969426-4969600)
chr2 (81-187)||(40210005-40210115)
chr2 (133-232)||(36193618-36193717)
chr2 (89-232)||(15260339-15260484)
chr2 (61-135)||(4285507-4285581)
chr2 (190-232)||(41317213-41317255)
chr2 (57-232)||(36003456-36003634)
chr2 (89-230)||(7438600-7438745)
chr2 (89-175)||(37468211-37468297)
[»] chr3 (25 HSPs)
chr3 (61-232)||(49875800-49875972)
chr3 (61-232)||(31350498-31350673)
chr3 (78-232)||(43898588-43898742)
chr3 (81-230)||(46114255-46114406)
chr3 (80-232)||(50886215-50886369)
chr3 (61-232)||(31425538-31425709)
chr3 (135-232)||(33976286-33976383)
chr3 (96-232)||(50886436-50886573)
chr3 (89-232)||(15927487-15927634)
chr3 (87-232)||(47479012-47479159)
chr3 (121-187)||(40367674-40367742)
chr3 (133-232)||(4617758-4617855)
chr3 (145-232)||(34608191-34608278)
chr3 (92-232)||(35986949-35987090)
chr3 (151-232)||(37143201-37143280)
chr3 (89-163)||(23553552-23553628)
chr3 (151-232)||(31930927-31931008)
chr3 (127-186)||(38017859-38017918)
chr3 (178-232)||(31664732-31664786)
chr3 (92-187)||(33389043-33389141)
chr3 (89-187)||(45292966-45293068)
chr3 (112-176)||(19961989-19962055)
chr3 (61-139)||(37143125-37143205)
chr3 (151-187)||(38910537-38910573)
chr3 (144-232)||(41610406-41610494)
[»] chr7 (12 HSPs)
chr7 (61-232)||(2819257-2819432)
chr7 (89-232)||(11778611-11778757)
chr7 (89-232)||(17117050-17117194)
chr7 (121-232)||(12651214-12651327)
chr7 (151-232)||(19223544-19223625)
chr7 (61-188)||(48814742-48814875)
chr7 (97-232)||(28565952-28566084)
chr7 (183-233)||(44255788-44255838)
chr7 (104-161)||(7990127-7990184)
chr7 (129-161)||(13437271-13437303)
chr7 (133-161)||(29763909-29763937)
chr7 (129-161)||(48639349-48639381)
[»] scaffold0481 (1 HSPs)
scaffold0481 (124-232)||(1093-1203)
[»] chr8 (17 HSPs)
chr8 (103-237)||(12171977-12172114)
chr8 (103-237)||(12416405-12416542)
chr8 (89-232)||(7612101-7612246)
chr8 (151-232)||(12946520-12946601)
chr8 (151-225)||(40649562-40649636)
chr8 (61-163)||(21514900-21515004)
chr8 (94-232)||(9306391-9306526)
chr8 (190-232)||(12946678-12946720)
chr8 (55-187)||(31266171-31266307)
chr8 (87-232)||(10309773-10309920)
chr8 (87-161)||(7602995-7603067)
chr8 (57-95)||(12946686-12946724)
chr8 (135-233)||(37792054-37792151)
chr8 (54-95)||(12946513-12946554)
chr8 (103-238)||(36023136-36023267)
chr8 (53-90)||(36023232-36023269)
chr8 (119-232)||(44712490-44712605)
[»] scaffold0687 (1 HSPs)
scaffold0687 (87-161)||(677-749)
[»] scaffold0295 (1 HSPs)
scaffold0295 (146-230)||(6038-6122)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 16967549 - 16967370
Alignment:
Q  55 aagaagaatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttc 152  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||  | |||||  | ||    
T  16967549 aagaggaatgatattttgacatccaattttcaacaacttttgtgacaactctcttttatactctcattatacttttattctctctctttcttttattctc 16967450  T
Q  153 tctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  16967449 tctattgttatcatccaataagaatagaggaaaaatgttgtccctaaaagttgttgaaaattagatgtcaaaatatcatt 16967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 29499843 - 29499669
Alignment:
Q  60 gaatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctct--cttcctttttctttctctat 157  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| | |||||||||| ||||||||||||| | |  |||||||||||| |||||||    
T  29499843 gaataatattttgacatccgattttcaacaacttttgtgacaactctattttatactctcattatacttttattatttttcttcctttttctctctctat 29499744  T
Q  158 tgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  29499743 tgttatcatccaataagaattgaggaaaaagattatccctaaaaattgttaaaaattggatgtcaaaatatcatt 29499669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 16594443 - 16594266
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctatt--atactctcgttatacttttattct--ctcttcctttttctttctcta 156  Q
    ||||||||||  |||| || |||| || |||||||||||||||||||| |   |||||||| ||||| |||||||||  |||||||||||||| ||||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaactctctttctcatactctcattatatttttattctttctcttcctttttctctctcta 16594344  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatttttct 237  Q
    |||||||  |||||||| || |||||||| |  ||||| ||||||    ||| ||||||| ||||||||||||||| ||||    
T  16594343 ttgttattgtccaataaaaagagaggaaataagttgtcactaaaa---attggaaattggttgtcaaaatatcattcttct 16594266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 5899923 - 5899824
Alignment:
Q  92 ttttgtgacaact--ctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||||||||  |||| | ||||| || || ||||||||||||||||  | |||||| ||||||||||||||| |||||||||||| ||||||||||    
T  5899923 ttttgtgacaactttctctctcatactttcattgtacttttattctctctctttctttttatttctctattgttattatccaataagaagagaggaaaaa 5899824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 10008550 - 10008408
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctct-tcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||||||||||||||| | |||||||| || |||||||| ||||||| ||| |||| | |||||||||||||  ||||||||| | |||  |||||    
T  10008550 aacttttgtgacaactctctctcatactctcattgtacttttactctctctctccctttt-tctctctattgttattgtccaataaggagaga-aaaaaa 10008453  T
Q  188 gattgtccctaaaagttgttgaaaattggatgtcaaaatatcattt 233  Q
    | ||||| || ||||||||| | |||||| |||| |||||||||||    
T  10008452 ggttgtcact-aaagttgtttacaattggttgtccaaatatcattt 10008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 21575714 - 21575631
Alignment:
Q  155 tattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatttttctt 238  Q
    |||||||||  |||| ||||||  |||||||||  ||||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  21575714 tattgttattgtccattaagaacggaggaaaaatgttgtcactaaatgttgtttaaaattggttgtcaaaatatcatttttctt 21575631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 16967509 - 16967543
Alignment:
Q  198 aaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||||||||||||||||||||||||    
T  16967509 aaaagttgttgaaaattggatgtcaaaatatcatt 16967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 25603723 - 25603560
Alignment:
Q  73 acattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattct--ctcttc----ctttttctttctctattgttatcat 166  Q
    ||||||| |||| ||  |||||||||||||||||||  ||||| ||| || ||||||||||||  ||||||    || | ||| |||||||||||||  |    
T  25603723 acattcattttttaacgacttttgtgacaactctctcatatacactcattgtacttttattctctctcttcctctctctctctctctctattgttattgt 25603624  T
Q  167 ccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||  || ||||||||||  || || |||||| |||||  ||||||| |||||||||||||||    
T  25603623 ccaata--aaaagaggaaaaatgttatcactaaaaattgttagaaattggttgtcaaaatatcatt 25603560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 26009199 - 26009134
Alignment:
Q  166 tccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||| ||||||||| | ||||| |||||||||||| |||||||  |||||||||||||||    
T  26009199 tccaataagaaaagaggaaaagg-ttgtcactaaaagttgtttaaaattgattgtcaaaatatcatt 26009134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 13739566 - 13739615
Alignment:
Q  183 aaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  13739566 aaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcatt 13739615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 25255331 - 25255379
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagag 181  Q
    ||||||||||||||||| ||||||||||| |   |||||||||||||||    
T  25255331 tctctcttcctttttctctctctattgttttggaccaataagaatagag 25255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 25319121 - 25319169
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagag 181  Q
    ||||||||||||||||| ||||||||||| |   |||||||||||||||    
T  25319121 tctctcttcctttttctctctctattgttttggaccaataagaatagag 25319169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 27260775 - 27260603
Alignment:
Q  60 gaatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctat 157  Q
    ||||||||||||||||| |||||||||| ||||||| |||||| ||||| |||||||||| |||||||||||||||||||  |||||||||| |||||||    
T  27260775 gaatgatattttgacatccaattttcaacaacttttatgacaattctcttttatactctcattatacttttattctctctcttcctttttctctctctat 27260676  T
Q  158 tgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatca 230  Q
    ||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  27260675 tgttatcatccaataagaacagaggaaaaatattgtctctaaaaattgttgaaaattggatgtcaaaatatca 27260603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 38289579 - 38289743
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtg-acaactctctattatactctcgttatacttttattctctcttcctttttctttctctattg 159  Q
    ||||||||||| |||| |||||||||| | |||||  | |||||||||| | |||||||| |||||||||||||||||||        || |||||||||    
T  38289579 aatgatattttaacatccaattttcaacagcttttaaggacaactctctttcatactctcattatacttttattctctct--------ctatctctattg 38289670  T
Q  160 ttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||  |||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||||    
T  38289671 ttattgtccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaaatttgatgtcaaaatatcatt 38289743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 5466337 - 5466227
Alignment:
Q  124 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtc 221  Q
    ||||||||||||  ||||||||||||||||||||||||||||  |||||||||||  |||||||||| ||||| |  ||||||||| |||||||| ||||    
T  5466337 tacttttattctctctcttcctttttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtc 5466238  T
Q  222 aaaatatcatt 232  Q
    |||||||||||    
T  5466237 aaaatatcatt 5466227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 29936767 - 29936921
Alignment:
Q  80 attttcaataacttttgtgacaactctctattatactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaat 177  Q
    ||||| || |||||| ||||||||||||| |  ||||||| || ||||||||||  |||||||| ||||||| || |||||||||| || ||||||||||    
T  29936767 atttttaacaactttggtgacaactctctctcttactctcattgtacttttattcgctctcttcttttttctctcactattgttattattcaataagaat 29936866  T
Q  178 agaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
     |||||||||  ||||  |  ||||||||| |||||||| ||| |||||||||||    
T  29936867 ggaggaaaaaagttgttacccaaagttgtttaaaattggttgttaaaatatcatt 29936921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 38762330 - 38762208
Alignment:
Q  112 atactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 209  Q
    |||| ||| |||||||||||||  |||||||| ||||||| |||||||| ||||  | |||||||||   || |||||| |||||||||||||||||| |    
T  38762330 atacactcattatacttttattatctctcttcatttttctctctctattattattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgttta 38762231  T
Q  210 aaattggatgtcaaaatatcatt 232  Q
    ||||||| |||||||||||||||    
T  38762230 aaattggttgtcaaaatatcatt 38762208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 48872716 - 48872797
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||| ||||||||    
T  48872716 tctctattgtcattgtccaataagaatagaggaaaaaggttgtcccaacaagttattgaaaattggatgtcaatatatcatt 48872797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 36775185 - 36775280
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatat 228  Q
    ||||||||||||||||| | |||||||||||  |||||||| || |||| |||||| ||||| |  |||||||||| ||||||| |||||||||||    
T  36775185 tctctcttcctttttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggttgtcaaaatat 36775280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 48872587 - 48872674
Alignment:
Q  57 gaagaatgatattttgacattcaattttcaataactt-ttgtgacaactctctattatactctcgttatacttttattctctcttcct 143  Q
    |||||||||||||||||||| |||||||||| ||||| | | ||||||||||| | |||||||| ||||| ||||||| |||||||||    
T  48872587 gaagaatgatattttgacatccaattttcaacaacttatagagacaactctctttcatactctcattatatttttattttctcttcct 48872674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 46039918 - 46040050
Alignment:
Q  73 acattcaattttcaataacttttgtgacaact--ctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatcc 168  Q
    ||||||| |||| || ||||||||||| || |  |||| | |||||||| || || |||||||||||||  | |||||||||||||||||||||| |||     
T  46039918 acattcatttttaaacaacttttgtgataaatttctctctcatactctcattgtatttttattctctctctttctttttctttctctattgttattatct 46040017  T
Q  169 aataagaatagagg-aaaaagattgtccctaaa 200  Q
    |||||||| ||||| |||||||||||| |||||    
T  46040018 aataagaagagaggaaaaaagattgtcactaaa 46040050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 16583128 - 16583000
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaac--tctctattatactctcgttatacttttat--tctctcttcctttttctttctcta 156  Q
    ||||||||||  ||| ||| |||| ||||||||||||||||||  ||||| |||||||||| || |||||||||  ||| |||| |||||||  ||||||    
T  16583128 aatgatatttgaacaatcacttttaaataacttttgtgacaactttctctcttatactctcattgtacttttatcctctttctttctttttc--tctcta 16583031  T
Q  157 ttgttatcatccaataagaatagaggaaaaa 187  Q
    || ||||  ||||||||||| ||||||||||    
T  16583030 ttattattgtccaataagaagagaggaaaaa 16583000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 35414549 - 35414468
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||  ||||||||||||||||||||||  |||||    |||||| || ||||||||||||||||||||||||    
T  35414549 tctctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcatt 35414468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 46859528 - 46859609
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||  || ||||| || |||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||||    
T  46859528 tctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggttgtctaaatatcatt 46859609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 42824525 - 42824623
Alignment:
Q  127 ttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaa 225  Q
    |||| |||||||||||| ||||| ||||||||| ||| |||||||||||| |||| |||||  ||||| |  ||||||||| |||||||  ||||||||    
T  42824525 tttttttctctcttcctatttctctctctattgatattatccaataagaaaagagaaaaaaagttgtcacataaagttgtttaaaattgtttgtcaaaa 42824623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 27260739 - 27260774
Alignment:
Q  197 taaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||||||||||||||||||||||||||||    
T  27260739 taaaagttgttgaaaattggatgtcaaaatatcatt 27260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 4604724 - 4604790
Alignment:
Q  166 tccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||||  || |||||  ||||||||||||||||||  ||||||| |||||||||||||||    
T  4604724 tccaataagaatgaagaaaaaaagttgtccctaaaagttgttttaaattggttgtcaaaatatcatt 4604790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 38289621 - 38289571
Alignment:
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatttttcttaa 240  Q
    |||||| |||||| ||||||||||||||||| |||||||||||| ||||||    
T  38289621 ttgtccttaaaagctgttgaaaattggatgttaaaatatcatttctcttaa 38289571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 48872633 - 48872591
Alignment:
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  48872633 ttgtctctataagttgttgaaaattggatgtcaaaatatcatt 48872591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 25302658 - 25302609
Alignment:
Q  112 atactctcgttatacttttattctctcttcctttttctttctctattgtt 161  Q
    |||||| | ||||||| ||||||||||||||||||||| |||||||||||    
T  25302658 atactcacattatactcttattctctcttcctttttctctctctattgtt 25302609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 49660065 - 49660146
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||| ||  || |||||||||||||||||||  ||||| |  |||||||||   ||||||||||||||||||||||    
T  49660065 tctctattgtaattgtctaataagaatagaggaaaaaagttgtcacccaaagttgtttggaattggatgtcaaaatatcatt 49660146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 49804927 - 49804874
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaa 186  Q
    ||||||||| | ||||||||||||||||| | ||||||||| || |||||||||    
T  49804927 tctctcttcttctttctttctctattgtttttatccaataaaaagagaggaaaa 49804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 702495 - 702424
Alignment:
Q  118 tcgttatacttttattctctcttc--ctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||| |||||||| ||||||  |||||||  |||||||||||||  |||||||||||  |||||||||    
T  702495 tcgttatatttttattccctcttcttctttttccctctctattgttattgtccaataagaaaggaggaaaaa 702424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 8905793 - 8905832
Alignment:
Q  121 ttatacttttatt--ctctcttcctttttctttctctatt 158  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  8905793 ttatacttttattttctctcttcctttttctttctctatt 8905832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 11121560 - 11121588
Alignment:
Q  133 tctctcttcctttttctttctctattgtt 161  Q
    |||||||||||||||||||||||||||||    
T  11121560 tctctcttcctttttctttctctattgtt 11121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 48872801 - 48872765
Alignment:
Q  57 gaagaatgatattttgacattcaattttcaataactt 93  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  48872801 gaagaatgatatattgacatccaattttcaataactt 48872765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 33085166 - 33085338
Alignment:
Q  60 gaatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattg 159  Q
    |||||||||||| ||||  ||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||| ||||||||||| |||||||||    
T  33085166 gaatgatattttaacatctaattttcaataacttttgtgacagctctcttttatactcttattatacttttattctcttttcctttttctctctctattg 33085265  T
Q  160 ttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||| |||| |||||||||||||||| |||||||| |||||||||| || |||||||||||||    
T  33085266 ttatcatccaataaaaataaaggaaaaagattgtccataaaagttattgaaaattgaatatcaaaatatcatt 33085338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 50645431 - 50645602
Alignment:
Q  58 aagaatgatattttgacattcaattttcaataacttttgtga-caactctctattatactctcgttatacttttattctctcttcctttttctttctcta 156  Q
    |||||||||||||||||||||||||||||| |||||||  || ||| ||||| | |||||||| ||||||||||||  ||||||| |||||||  |||||    
T  50645431 aagaatgatattttgacattcaattttcaacaacttttaagaacaattctctttcatactctcattatacttttata-tctcttcttttttct--ctcta 50645527  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatg-tcaaaatatca 230  Q
    ||||||| ||||||||||||||||| |||||  ||||| |||||||||||||||||||||||| |||||||||||    
T  50645528 ttgttattatccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaaattggatgttcaaaatatca 50645602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 25467847 - 25467973
Alignment:
Q  92 ttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagatt 191  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||              ||||||||||||||||||||||||||| ||||| |||    
T  25467847 ttttatgacaactctcttttatactctcattatacttttattctctctt--------------tattgttatcatccaataagaatagagaaaaaaaatt 25467932  T
Q  192 gtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
     ||||||||||||||||||||||| ||||||||||||||||    
T  25467933 atccctaaaagttgttgaaaattgcatgtcaaaatatcatt 25467973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 246
Target Start/End: Complemental strand, 23719546 - 23719399
Alignment:
Q  101 aactctctattatactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtcccta 198  Q
    |||||||| | ||| |||| |||||||||||||  |||||||||| ||| | |||||||||||||  || ||||||||  | |||||||| |||||  |     
T  23719546 aactctctctcatattctcattatacttttattttctctcttcctctttttctctctattgttattgtcgaataagaaaggcggaaaaaggttgtcattc 23719447  T
Q  199 aaagttgttgaaaattggatgtcaaaatatcatttttcttaactaaat 246  Q
    |||||||||  ||||||| |||||||||||||||  ||||||||||||    
T  23719446 aaagttgtttcaaattggttgtcaaaatatcattcctcttaactaaat 23719399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 54342839 - 54342961
Alignment:
Q  112 atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttga 209  Q
    |||||||| |||||||||||||||||||  || ||||||| | | |||||||||  |||||||||||  |||||| ||| ||||| |  ||||||||| |    
T  54342839 atactctcattatacttttattctctctcttcttttttctctttgtattgttattgtccaataagaaaggaggaacaaggttgtcacccaaagttgttta 54342938  T
Q  210 aaattggatgtcaaaatatcatt 232  Q
    ||||||| |||||| ||||||||    
T  54342939 aaattggttgtcaagatatcatt 54342961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 51734672 - 51734556
Alignment:
Q  89 aacttttgtgacaact--ctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagag-ga 183  Q
    ||||||||||||||||  |||| | |||||||| || ||||||||||||||||  | |||||||| |||||||||||||  ||||||||||| ||||  |    
T  51734672 aacttttgtgacaactttctctctcatactctcattgtacttttattctctctctttctttttctctctctattgttattgtccaataagaagagagaaa 51734573  T
Q  184 aaaagattgtccctaaa 200  Q
    ||||||||||| |||||    
T  51734572 aaaagattgtcactaaa 51734556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 54128172 - 54128225
Alignment:
Q  179 gaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  54128172 gaggaaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcatt 54128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 33085342 - 33085304
Alignment:
Q  57 gaagaatgatattttgacattcaattttcaataactttt 95  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33085342 gaagaatgatattttgatattcaattttcaataactttt 33085304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 54128085 - 54128135
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctct 139  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||||    
T  54128085 aacttttgtgacaactctctctcatactctcattgtacttttattctctct 54128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 50645469 - 50645434
Alignment:
Q  197 taaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50645469 taaaagttgttgaaaattgaatgtcaaaatatcatt 50645434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 54909358 - 54909471
Alignment:
Q  92 ttttgtgacaactctctatt--atactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaa-aa 186  Q
    ||||||||||||| ||| ||  |||||| | || ||||||||||  ||||||| |||||||| |||||||||||||  |||||| | || ||||||| ||    
T  54909358 ttttgtgacaactttctctttcatactcacattttacttttattttctctctttctttttctctctctattgttattgtccaatgaaaagagaggaataa 54909457  T
Q  187 agattgtccctaaa 200  Q
    || |||||||||||    
T  54909458 aggttgtccctaaa 54909471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 3698342 - 3698474
Alignment:
Q  86 aataacttttgtgacaa--ctctctattatactctcgttatacttttat--tctctcttcctttttctttctctattgttatcatccaataagaatagag 181  Q
    |||||| ||||||||||  |||||| | |||||||  || |||||||||  ||||||||| |||||||   | |||||||||  |||||||| || ||||    
T  3698342 aataacatttgtgacaactctctctctcatactcttattgtacttttattctctctcttcttttttctccttttattgttattgtccaataaaaagagag 3698441  T
Q  182 gaaaaagattgtccctaaaagttgttgaaaatt 214  Q
    ||||||  ||||| |||||| |||||| |||||    
T  3698442 gaaaaaagttgtcactaaaaattgttggaaatt 3698474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 4272502 - 4272460
Alignment:
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 4272460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 7146134 - 7146069
Alignment:
Q  124 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    ||||||||||||  ||||| |||||||| |||||||||||||  |||||||| || ||||||||||    
T  7146134 tacttttattctctctctttctttttctctctctattgttattgtccaataaaaagagaggaaaaa 7146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 25467980 - 25467939
Alignment:
Q  54 aaagaagaatgatattttgacattcaattttcaataactttt 95  Q
    ||||| ||||||||||||||||| |||||||||| |||||||    
T  25467980 aaagacgaatgatattttgacatgcaattttcaacaactttt 25467939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 28982706 - 28982533
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctatt 158  Q
    ||||||||||  |||| || |||| || |||||||||||||||||||| | |||||||| || ||||||||||||||||  |||||||||| || |||||    
T  28982706 aatgatatttgaacatccattttttaacaacttttgtgacaactctctctcatactctcattgtacttttattctctctcttcctttttctctccctatt 28982607  T
Q  159 gttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
     ||||  |||||||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  28982606 attattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggttgtcaaaatatcatt 28982533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 34383925 - 34383750
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaac--tctctattatactctcgttatacttttattctctctt--cctttttctttctcta 156  Q
    ||||||||||  ||||||| |||| || || ||||||||||||  ||||| | ||||| || || || ||||||| ||||||  ||||||||| ||||||    
T  34383925 aatgatatttgaacattcattttttaacaatttttgtgacaaccctctctctcatactttcattgtatttttattatctcttttcctttttctctctcta 34383826  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||  |||||||| || ||||||||| | ||||| ||||||||||||  |||||||||||||||||||||||    
T  34383825 ttgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 34383750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 354308 - 354450
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaag 188  Q
    |||||||||||||||||||| | |||||||  || | ||||||||||||||   | ||||| |||||||||||||  |||||||| || ||||||||||     
T  354308 aacttttgtgacaactctctctcatactcttattgttcttttattctctctctttctttctctctctattgttattgtccaataa-aagagaggaaaaaa 354406  T
Q  189 attgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||| ||| |||||||||||| ||||||| |||||||||||||||    
T  354407 attatccttaaaagttgttggaaattggttgtcaaaatatcatt 354450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 5456917 - 5456742
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct----tcctttttctttctcta 156  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||| | ||| | |  |||||||||||||||||||    || ||||||| ||||||    
T  5456917 aatgatatttgaacattcattttttaacaacttttgtgacaactctctctcatatttttattatacttttattctctctctcttcttttttctctctcta 5456818  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||  |||||||| || || | |||||  || || ||||||||||||| ||||||| |||||||||||||||    
T  5456817 ttgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggttgtcaaaatatcatt 5456742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 2204442 - 2204312
Alignment:
Q  89 aacttttgtgacaactctctatt--atactctcgttatacttttattctc--tcttcctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    |||||||||||||||||||| |   ||| | || || |||||||||||||  ||||||||| ||| |||||||| ||||  |||||||| || |||||||    
T  2204442 aacttttgtgacaactctctctctcataatttcattgtacttttattctccctcttcctttctctctctctattattattgtccaataaaaagagaggaa 2204343  T
Q  185 aaagattgtccctaaaagttgttgaaaattg 215  Q
    |||| ||||| ||||||||||||| ||||||    
T  2204342 aaaggttgtcactaaaagttgttggaaattg 2204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 10729600 - 10729750
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctct----tcctttttctttctctattgttatcat---ccaataagaatagag 181  Q
    ||||||||||||||||| || | ||||| || || || |||||||||||||    |  ||||||| ||||||||||| | ||   ||| ||| || ||||    
T  10729600 aacttttgtgacaactcactctcatactttcattgtatttttattctctctcttcttttttttctctctctattgttgttattgtccagtaaaaagagag 10729699  T
Q  182 gaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  10729700 gaaaaaggttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 10729750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 23632676 - 23632585
Alignment:
Q  89 aacttttgtgacaactctctatt--atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaa 176  Q
    ||||||||||||| || |||||   |||||||| || ||||||||||||||||  | |||||||| |||||||||||||  |||||||||||    
T  23632676 aacttttgtgacacctttctatctcatactctcattgtacttttattctctctcttactttttctctctctattgttattgtccaataagaa 23632585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 11742997 - 11742948
Alignment:
Q  112 atactctcgttatacttttattctctcttcctttttctttctctattgtt 161  Q
    |||||| | ||||| ||||| ||||||||||||||||| |||||||||||    
T  11742997 atactcacattatatttttactctctcttcctttttctctctctattgtt 11742948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 41831017 - 41830934
Alignment:
Q  237 ttaactaaataagctaacaaaaggacttggagttaaatacactccatatctgaaggttttttattagcttacatgcaaagtatt 320  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41831017 ttaactaaataagctaacaaaaggacttggagttaaagacactccatatctgaaggttttttattagcttacatgcaaagtatt 41830934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 41317265 - 41317376
Alignment:
Q  123 atacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgt 220  Q
    |||||||||||||  |||||||||||||| |||||||||| ||  | |||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  41317265 atacttttattcttgctcttcctttttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattggatgt 41317364  T
Q  221 caaaatatcatt 232  Q
    ||||||||||||    
T  41317365 caaaatatcatt 41317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 4969600 - 4969426
Alignment:
Q  60 gaatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctat 157  Q
    ||||||||||||||||  || |||| || |||||| ||||||||||||| | |||||| | || ||||||||||||||||  || ||||||| |||||||    
T  4969600 gaatgatattttgacaaccattttt-aacaactttggtgacaactctctctcatactcacattgtacttttattctctctcttcttttttctctctctat 4969502  T
Q  158 tgttatcatccaataagaatagaggaaaaaga-ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||  ||||||||||||| |||||||| | |||||    |||||||||  |||||||||||||||||||||||    
T  4969501 tgttattgtccaataagaataaaggaaaaaaagttgtcatccaaagttgtttgaaattggatgtcaaaatatcatt 4969426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 40210115 - 40210005
Alignment:
Q  81 ttttcaataacttttgtgacaact--ctctattatactctcgttatacttttattctct--cttcctttttctttctctattgttatcatccaataagaa 176  Q
    |||| ||||| |||||||||||||  |||| | |||||| | |||||||||||||||||  ||| |||||||| |||||||||||||  |||||||||||    
T  40210115 ttttaaataatttttgtgacaactttctctctcatactcacattatacttttattctctttctttctttttctctctctattgttattgtccaataagaa 40210016  T
Q  177 tagaggaaaaa 187  Q
     ||||||||||    
T  40210015 gagaggaaaaa 40210005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 36193717 - 36193618
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||| ||||||| ||||||||| |||  |||||||||||| ||||||||||||| |     ||||||||  |||||||| |||||||||||||||    
T  36193717 tctctcttcatttttctctctctattgctattgtccaataagaatggaggaaaaagattataatccaaagttgtctaaaattggttgtcaaaatatcatt 36193618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 15260339 - 15260484
Alignment:
Q  89 aacttttgtgacaactctctatt--atactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    |||||||||||||||||||| |   |||| ||| |||||||||||||  |||||||||||| |||  ||||||| ||||  |||||||| ||   || ||    
T  15260339 aacttttgtgacaactctctctctcatacactcattatacttttattttctctcttcctttctct--ctctattattattgtccaataaaaaggaagaaa 15260436  T
Q  185 aaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||| ||||||||| || || |||||||| ||| |||||||||||    
T  15260437 aaagattatccctaaaaattatttaaaattggttgttaaaatatcatt 15260484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 4285507 - 4285581
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattct 135  Q
    ||||||||||| ||| ||| |||| ||||| ||||| ||||||||||| | |||||||| || ||||||||||||    
T  4285507 aatgatattttaacagtcatttttaaataatttttgggacaactctctctcatactctcattgtacttttattct 4285581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 41317255 - 41317213
Alignment:
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  41317255 ttgtccctaaaaattgttgaaaatttgatgtcaaaatatcatt 41317213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 36003634 - 36003456
Alignment:
Q  57 gaagaatgatattttgacattcaattttcaataacttttgtgacaact--ctctattatactctcgttatacttttattct--ctcttcctttttctttc 152  Q
    ||||||||||||||||||| ||| |||| || || ||| |||||||||  |||||| ||| |||| |  ||||||||||||  |||||| ||||||| |     
T  36003634 gaagaatgatattttgacaatcattttt-aacaattttggtgacaactttctctatcatattctcatcgtacttttattctttctcttcttttttctctt 36003536  T
Q  153 tctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||  | |||||||||| ||| |||||  ||||| |  ||| || ||  |||||  ||||||||||||||||    
T  36003535 tctattgttattgttcaataagaatggagaaaaaaagttgtcacccaaaattatttgaaattaaatgtcaaaatatcatt 36003456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 7438600 - 7438745
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctc---ttcctttt-tctttctctattgttatcatccaataagaatagag-ga 183  Q
    ||||||| |||||||||||| | |||||| | || ||||||||||| |||   |||||||| |||||||||||||||||  |||||| | || ||||  |    
T  7438600 aacttttatgacaactctctctcatactcacattctacttttattccctctctttccttttctctttctctattgttattgtccaatgaaaagagagaaa 7438699  T
Q  184 aaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatca 230  Q
    ||||| |||||||| |||||||||  |  |||| |||||||||||||    
T  7438700 aaaaggttgtccct-aaagttgttttattttggttgtcaaaatatca 7438745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 37468297 - 37468211
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattct--ctcttcctttttctttctctattgttatcatccaataaga 175  Q
    |||||||||||||||||||  | |||||||| || ||||||||||||  |||| | | ||||| |||||||||||||  ||||||||||    
T  37468297 aacttttgtgacaactctc--tcatactctcattgtacttttattctacctctccttctttctctctctattgttattgtccaataaga 37468211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 49875800 - 49875972
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttat--tctctcttcctttttctttctctatt 158  Q
    ||||||||||| |||| || |||| || |||||||||||||||||||| | |||||||  || |||||||||  ||||||||| ||||||| ||||||||    
T  49875800 aatgatattttaacatccattttttaacaacttttgtgacaactctctctcatactcttattgtacttttattctctctcttcatttttctctctctatt 49875899  T
Q  159 gttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||  |||||| | || |||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||    
T  49875900 gttattgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggttgtcaaaatatcatt 49875972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 31350673 - 31350498
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctatt--atactctcgttatacttttattc--tctcttcctttttctttctcta 156  Q
    ||||||||||| |||| || |||| || || ||||||||||||||||| |   ||||||| ||| |||||||||||  ||||||||||||||| ||| ||    
T  31350673 aatgatattttaacatccattttttaacaatttttgtgacaactctctctctcatactcttgttgtacttttattcactctcttcctttttctctctata 31350574  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||  |||||||| || |||| |||||  ||||| ||||||||||||| ||||||| |||||||||||||||    
T  31350573 ttgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 31350498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 43898588 - 43898742
Alignment:
Q  78 caattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaat 177  Q
    ||||||| || |||||||||||||||||||| | |||||||| |||||||||||||  ||||| |||||| | |||||||||||||  |||||||||||     
T  43898588 caattttaaacaacttttgtgacaactctctctcatactctcattatacttttatttcctctttctttttttctctctattgttattgtccaataagaag 43898687  T
Q  178 agaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    | || |||||  |||||  | ||||||||| |||| | | |||||||||||||||    
T  43898688 atagaaaaaaagttgtcaatgaaagttgtttaaaaattgttgtcaaaatatcatt 43898742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 46114406 - 46114255
Alignment:
Q  81 ttttcaataacttttgtgacaactctctattatactctcgttatacttttatt--ctctcttcctttttctttctctattgttatcatccaataagaata 178  Q
    ||||||| || |||| |||||||||||| ||||| |||| || ||||||||||  |||||||| ||||||| |||||||||||||  | |||||  || |    
T  46114406 ttttcaacaatttttatgacaactctctcttatattctcattgtacttttattttctctcttcttttttctctctctattgttattgttcaatagaaaga 46114307  T
Q  179 gaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatca 230  Q
    |||||||||| ||||| | ||||||||||| ||||||  |||||||||||||    
T  46114306 gaggaaaaaggttgtcaccaaaagttgttggaaattgattgtcaaaatatca 46114255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 50886215 - 50886369
Alignment:
Q  80 attttcaataacttttgtgacaac--tctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataaga 175  Q
    ||||| || |||||||||||||||  ||||| | |||||||| || || |||||||||||||  |||||||||| |||||||||||||  |||||||| |    
T  50886215 atttttaacaacttttgtgacaacactctctctcatactctcattgtatttttattctctctcttcctttttctctctctattgttattgtccaataaaa 50886314  T
Q  176 atagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |  |||||||||  ||||| || |||||||||||||||||  |||||||||||||||    
T  50886315 a--gaggaaaaacgttgtcactgaaagttgttgaaaattgattgtcaaaatatcatt 50886369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 31425538 - 31425709
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgt 160  Q
    ||||||||||  |||| || |||| || ||||||||||||||   ||| | |||||||| || ||||||||||||||||   | ||| | ||||||||||    
T  31425538 aatgatatttgaacatccattttttaacaacttttgtgacaatcatctctcatactctcattgtacttttattctctctctttctttttctctctattgt 31425637  T
Q  161 tatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||  |||||||| || ||||||||||| |||||  ||||| || ||||||||| | |||||||||||||||    
T  31425638 tattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaattagttgtcaaaatatcatt 31425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 33976383 - 33976286
Alignment:
Q  135 tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||| ||||||| ||||||||||||| ||||||||| || |||||||||   ||||| |||||| ||||||||||||  ||||||||||||||||    
T  33976383 tctcttcatttttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaattaaatgtcaaaatatcatt 33976286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 50886436 - 50886573
Alignment:
Q  96 gtgacaactctctattatactctcgttatacttttat-tctctcttcctttttctttctct--attgttatcatccaataagaatagaggaaaaagattg 192  Q
    |||||||||||||   |||||||| |||||||||  | |||||||||||||||||||||||  |||| |||  |||||||||||| |||||||||| |||    
T  50886436 gtgacaactctctc--atactctcattatactttattctctctcttcctttttctttctctctattgctattgtccaataagaatggaggaaaaaggttg 50886533  T
Q  193 tccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    || |  ||||||||  |||||||| |||||||||||||||    
T  50886534 tcacccaaagttgtctaaaattggttgtcaaaatatcatt 50886573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 15927634 - 15927487
Alignment:
Q  89 aacttttgtgacaactctctatt--atactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    ||||||||| |||||||||| |   |||||||| || ||||||||||||||||  |||||||||| || ||||||||||  |||||||| || || | ||    
T  15927634 aacttttgtaacaactctctctctcatactctcattgtacttttattctctctcttcctttttctctcactattgttattgtccaataaaaagagcgaaa 15927535  T
Q  185 aaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||  ||||| |||||| || ||| ||||||| |||||||||||||||    
T  15927534 aaaagttgtcactaaaaattattggaaattggttgtcaaaatatcatt 15927487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 47479012 - 47479159
Alignment:
Q  87 ataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    |||| ||||||||||||||| | | ||||  |  ||||| |||||||||||||  ||||||||||||||||||| ||||  || || |||||   || ||    
T  47479012 ataatttttgtgacaactctttctcatacatttattatatttttattctctctcttcctttttctttctctattattattgtcaaagaagaaggaagaaa 47479111  T
Q  185 aaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||| ||||||||||||| ||||| |||||||  |||||||||||||||    
T  47479112 aaaaattgtccctaaaaattgtttaaaattgattgtcaaaatatcatt 47479159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 40367674 - 40367742
Alignment:
Q  121 ttatacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||||||||||  ||||| |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  40367674 ttatacttttattctgtctctttctttttctctctctattgttattatccaataagaagagaggaaaaa 40367742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 4617758 - 4617855
Alignment:
Q  133 tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||||  ||||||||||||||  |||||||| ||||||||||||| | ||||    ||| |||||  |||||||||||||||||||||||    
T  4617758 tctctcttccttttt--ttctctattgttattgtccaataaaaatagaggaaaaaaactgtcatccaaaattgtttgaaattggatgtcaaaatatcatt 4617855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 34608191 - 34608278
Alignment:
Q  145 tttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||| |||||||| |||| ||||||||||||   || ||||||||| ||||||||||||||| ||||||   |||||||||||||||    
T  34608191 tttctctctctattattattatccaataagaaggaagaaaaaagattatccctaaaagttgtttaaaattaattgtcaaaatatcatt 34608278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 35986949 - 35987090
Alignment:
Q  92 ttttgtgacaactctctattatactctcgttatacttttattctctctt--cctttttctttctctattgttatcatccaataagaatagaggaaaaaga 189  Q
    ||||||||||||||||| | ||| | || || ||||||||| |||||||  ||||||||| ||| |||| ||||  || ||||| || | || ||||||     
T  35986949 ttttgtgacaactctctctcatattttcattgtacttttatcctctcttttcctttttctctct-tattattattgtctaataaaaaaaaagaaaaaagt 35987047  T
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    || ||  |||||||||||||||||||| |||||||||||||||    
T  35987048 ttatcattaaaagttgttgaaaattggttgtcaaaatatcatt 35987090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 37143201 - 37143280
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||  |||||||| ||  |||||||||| ||||| ||||||||||||| ||||| | |||||||||||||||    
T  37143201 tctctattgttattgtccaataaaaa--gaggaaaaaggttgtcactaaaagttgttggaaattagttgtcaaaatatcatt 37143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 23553628 - 23553552
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattct--ctcttcctttttctttctctattgttat 163  Q
    |||||||||||||||||||| | |||||||  || ||||||||||||  ||||| |||||||| |||||||||||||    
T  23553628 aacttttgtgacaactctctctcatactcttattgtacttttattctctctctttctttttctctctctattgttat 23553552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 31931008 - 31930927
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||  |||||| | || ||||||||||| || || |||||| |||||| ||||||| |||||||||||||||    
T  31931008 tctctattgttattctccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggttgtcaaaatatcatt 31930927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 38017918 - 38017859
Alignment:
Q  127 ttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaa 186  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||||||| |||| ||||    
T  38017918 ttttattctctcttcttctttctttctctattgtttttatccaataagaagagagaaaaa 38017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 31664732 - 31664786
Alignment:
Q  178 agaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||| || || ||||||||||||| ||||||| |||||||||||||||    
T  31664732 agaggaaaaaggttatcactaaaagttgttggaaattggttgtcaaaatatcatt 31664786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 33389043 - 33389141
Alignment:
Q  92 ttttgtgacaact--ctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||||||||  |||| | |||||||| |||||||||||||||||||  | | |||||| ||| |||| |||| |||||||||||| ||||||||||    
T  33389043 ttttgtgacaactttctctctcatactctcattatacttttattctctctcattccttttctctctatatt-ttattatccaataagaagagaggaaaaa 33389141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 45293068 - 45292966
Alignment:
Q  89 aacttttgtgacaact--ctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    ||||||||||||||||  |||| | |||||| | ||||| |||||||||||||  | |||||||| |||| ||| ||||  ||||||||||| |||||||    
T  45293068 aacttttgtgacaactttctctctcatactcacattatatttttattctctctctttctttttctctctccattcttattgtccaataagaaaagaggaa 45292969  T
Q  185 aaa 187  Q
    |||    
T  45292968 aaa 45292966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 19961989 - 19962055
Alignment:
Q  112 atactctcgttatacttttattctc--tcttcctttttctttctctattgttatcatccaataagaa 176  Q
    |||| ||| ||||||||||||||||  ||||||||||||| |||||||| ||||  |||||||||||    
T  19961989 atacactcattatacttttattctctctcttcctttttctctctctattattattgtccaataagaa 19962055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 37143125 - 37143205
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaac--tctctattatactctcgttatacttttattctctct 139  Q
    ||||||||||  |||| || |||| || |||||||||||||||  ||||| | |||||||| || ||||||||||||||||    
T  37143125 aatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactctcattgtacttttattctctct 37143205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 38910573 - 38910537
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaa 187  Q
    ||||||||||| | |||||||||||||||||||||||    
T  38910573 tctctattgtttttatccaataagaatagaggaaaaa 38910537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 41610406 - 41610494
Alignment:
Q  144 ttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||| |||||||||||||  || ||||| || |||| |||||  ||||| ||| |||||||| |||||| |  ||||||||||||||    
T  41610406 ttttctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtttaaaatttgtagtcaaaatatcatt 41610494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 2819257 - 2819432
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaac--tctctattatactctcgttatacttttattctct--cttcctttttctttctcta 156  Q
    ||||||||||  |||| || |||| || ||||||| |||||||  ||||| | ||| |||| || ||||||||||||||  |||| ||||||| ||||||    
T  2819257 aatgatatttgaacatccattttttaacaacttttatgacaaccatctctctcatattctcattgtacttttattctctatcttcgtttttctgtctcta 2819356  T
Q  157 ttgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||  |||||||| || ||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||    
T  2819357 ttgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaatatcatt 2819432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 11778611 - 11778757
Alignment:
Q  89 aacttttgtgacaactctctattatac-tctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaa 185  Q
    |||||||||||||||||||| | |||  | || |||||||||||||||||||  || ||||||| |||||||| ||||  |||||||||||   || |||    
T  11778611 aacttttgtgacaactctctctcatatatttcattatacttttattctctctcttcatttttctctctctattattattgtccaataagaaggaagaaaa 11778710  T
Q  186 aagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    || ||||||||||||||||||| |||||||| |||||||||||||||    
T  11778711 aaaattgtccctaaaagttgtttaaaattggttgtcaaaatatcatt 11778757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 17117194 - 17117050
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttat-tctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||| ||||||||||||| | ||| | || |||||||||| | ||||||||||||||||  ||||||||| |||  |||| ||||||| |||||||||    
T  17117194 aactttggtgacaactctctctcatattatcattatacttttttctctctcttcctttttcactctctattgctattgtccagtaagaatggaggaaaaa 17117095  T
Q  188 gattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    | ||||| |  ||| ||||  |||||||| |||||||||||||||    
T  17117094 ggttgtcacccaaaattgtctaaaattggttgtcaaaatatcatt 17117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 12651327 - 12651214
Alignment:
Q  121 ttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggat 218  Q
    |||||||||||||||||||  |  ||||||| |||||||||||||  |||||||  || ||||||||||  ||||| | ||||||||||| ||||||| |    
T  12651327 ttatacttttattctctctctttatttttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggtt 12651228  T
Q  219 gtcaaaatatcatt 232  Q
    ||||||||||||||    
T  12651227 gtcaaaatatcatt 12651214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 19223544 - 19223625
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||||  |||||||| || |||||||||| ||||||  ||||| || ||||||||||  |||||||||||||||    
T  19223544 tctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattgattgtcaaaatatcatt 19223625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 48814875 - 48814742
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaac--tctctattatactctcgttat--acttttattctc--tcttcctttttctttctc 154  Q
    ||||||||||  ||||||| |||| || |||||||||||||||  ||||| | |||||||  || |  ||||||||||||  ||||||||||||| ||||    
T  48814875 aatgatatttgaacattcattttttaacaacttttgtgacaaccctctctctcatactcttattttttacttttattctccctcttcctttttctctctc 48814776  T
Q  155 tattgttatcatccaataagaatagaggaaaaag 188  Q
    |||||||||  |||||||| || |||| ||||||    
T  48814775 tattgttattgtccaataaaaaaagagaaaaaag 48814742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 28566084 - 28565952
Alignment:
Q  97 tgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccc 196  Q
    ||||||||||||| ||  ||||| || || ||||||| |||||| ||||  | ||||||||| |||| ||||||||| ||  |||||||| | ||||| |    
T  28566084 tgacaactctctaatactctctccttgtatttttattttctcttacttt--cattctctatttttattatccaataaaaaaggaggaaaagg-ttgtctc 28565988  T
Q  197 taaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
      ||||||||| |||||||  |||||||||||||||    
T  28565987 ccaaagttgtttaaaattgattgtcaaaatatcatt 28565952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 44255838 - 44255788
Alignment:
Q  183 aaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcattt 233  Q
    |||||| ||||||||||||||| || |||||||  ||||||||||||||||    
T  44255838 aaaaaggttgtccctaaaagttatttaaaattgattgtcaaaatatcattt 44255788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 7990127 - 7990184
Alignment:
Q  104 tctctattatactctcgttatacttttattctctcttcctttttctttctctattgtt 161  Q
    ||||| |||||||| | ||||||| ||||||||||||| ||||||| |||| ||||||    
T  7990127 tctctcttatactcacattatactcttattctctcttcttttttctctctccattgtt 7990184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 13437271 - 13437303
Alignment:
Q  129 ttattctctcttcctttttctttctctattgtt 161  Q
    ||||||||||||||||||| |||||||||||||    
T  13437271 ttattctctcttcctttttgtttctctattgtt 13437303  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 29763909 - 29763937
Alignment:
Q  133 tctctcttcctttttctttctctattgtt 161  Q
    |||||||||||||||||||||||||||||    
T  29763909 tctctcttcctttttctttctctattgtt 29763937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 48639381 - 48639349
Alignment:
Q  129 ttattctctcttcctttttctttctctattgtt 161  Q
    ||||||||||||||||||||| |||||||||||    
T  48639381 ttattctctcttcctttttctctctctattgtt 48639349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 1203 - 1093
Alignment:
Q  124 tacttttattct--ctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtc 221  Q
    ||||||||||||  |||||||||||||| |||||||||||||  |||||||||||  |||||||||| ||||| |  ||||||||| |||||||| ||||    
T  1203 tacttttattctctctcttcctttttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtc 1104  T
Q  222 aaaatatcatt 232  Q
    |||||||||||    
T  1103 aaaatatcatt 1093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 12172114 - 12171977
Alignment:
Q  103 ctctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaa-taagaatagaggaaaaagattgtccctaa 199  Q
    |||||| | |||||||| || ||||||||||||||||  || ||||||| |||||||||||||  ||||| ||||||  |||||||||| ||||| ||||    
T  12172114 ctctctctcatactctcattgtacttttattctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaa 12172015  T
Q  200 aagttgttgaaaattggatgtcaaaatatcatttttct 237  Q
    || ||||| |||||||| ||||||||||||||| ||||    
T  12172014 aatttgtttaaaattggttgtcaaaatatcattcttct 12171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 12416542 - 12416405
Alignment:
Q  103 ctctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaa-taagaatagaggaaaaagattgtccctaa 199  Q
    |||||| | |||||||| || ||||||||||||||||  || ||||||| |||||||||||||  ||||| ||||||  |||||||||| ||||| ||||    
T  12416542 ctctctctcatactctcattgtacttttattctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaa 12416443  T
Q  200 aagttgttgaaaattggatgtcaaaatatcatttttct 237  Q
    || ||||| |||||||| ||||||||||||||| ||||    
T  12416442 aatttgtttaaaattggttgtcaaaatatcattcttct 12416405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 7612246 - 7612101
Alignment:
Q  89 aacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaa 186  Q
    ||||||||||| |||||||| | ||||  |  ||||| |||||||||||||  |  ||||||| |||||||| ||||  || ||||||||   || ||||    
T  7612246 aacttttgtgataactctctctcatacatttattatatttttattctctctctttatttttctctctctattattattgtctaataagaaggaagaaaaa 7612147  T
Q  187 agattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||    
T  7612146 agattgtccctaaaagttgtttaaaattggttgtcaaaatatcatt 7612101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 12946601 - 12946520
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||| ||  | |||||| ||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  12946601 tctctattgtcattgttcaataaaaatagagaaaaaaagttgtcccaaaaagttgttgaaaattggatgtcaaaatatcatt 12946520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 40649562 - 40649636
Alignment:
Q  151 tctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaa 225  Q
    ||||||||| |||  |||||||| |||||||||||||| ||||| |||||| |||||||||||||| ||||||||    
T  40649562 tctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaa 40649636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 21515004 - 21514900
Alignment:
Q  61 aatgatattttgacattcaattttcaataacttttgtgacaactctctattatactctcgttatacttttattctctct--tcctttttctttctctatt 158  Q
    ||||||||||  |||| || |||| || || |||||||||||| |||| | |||||||| || ||||||||||||||||  |||||||||| ||||||||    
T  21515004 aatgatatttgaacatccattttttaacaatttttgtgacaaccctctctcatactctcattgtacttttattctctctcatcctttttctctctctatt 21514905  T
Q  159 gttat 163  Q
    |||||    
T  21514904 gttat 21514900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 9306526 - 9306391
Alignment:
Q  94 ttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgt 193  Q
    ||||||||||||||| | |||| ||  | ||| ||||||||||||||||||||  |||||||||| ||||  ||||||||||||  || |||||  || |    
T  9306526 ttgtgacaactctctttcatacacttataatatttttattctctcttcctttt--tttctctattattattgtccaataagaatgtagaaaaaaagttat 9306429  T
Q  194 ccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||| || ||  ||||||  |||||||||||||||    
T  9306428 ccctaaaa-ttattttaaattgattgtcaaaatatcatt 9306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 12946678 - 12946720
Alignment:
Q  190 ttgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  12946678 ttgtccctaaaaattattgaaaattggatgtcaaaatatcatt 12946720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 31266307 - 31266171
Alignment:
Q  55 aagaagaatgatattttgacattcaattttcaataacttttgtgacaa--ctctctattatactctcgttatacttttattctctcttc--ctttttctt 150  Q
    ||||| ||||||||||  |||| || |||| || || |||||||| ||  |||||| | ||||| || || |||||||||||||||||   ||||||||     
T  31266307 aagaaaaatgatatttgaacatccattttttaacaatttttgtgataattctctctctcatactttcattgtacttttattctctctttttctttttctc 31266208  T
Q  151 tctctattgttatcatccaataagaatagaggaaaaa 187  Q
    |||||||||||||  |||||||| || ||||||||||    
T  31266207 tctctattgttattgtccaataaaaagagaggaaaaa 31266171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 10309920 - 10309773
Alignment:
Q  87 ataacttttgtgacaactctctattatactctcgttatacttttattctctctt--cctttttctttctctattgttatcatccaataagaatagaggaa 184  Q
    |||| ||| ||||||| ||||| | ||||| || ||||| ||||||||||||||  ||||||||  ||| |||||||||  |||||||| ||   |||||    
T  10309920 ataattttggtgacaattctctctcatactttcattatatttttattctctcttttcctttttccctctttattgttattgtccaataaaaaagaaggaa 10309821  T
Q  185 aaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcatt 232  Q
    |||| || || |  ||| ||||| |||||||  |||||||||||||||    
T  10309820 aaaggttatcacccaaaattgtttaaaattgattgtcaaaatatcatt 10309773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 7603067 - 7602995
Alignment:
Q  87 ataacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgtt 161  Q
    ||||||||| |||||||||||| |||||||| ||||||  | ||||||||||||| |||||| |||| |||||||    
T  7603067 ataactttt-tgacaactctct-ttatactcgcgttatgttcttattctctcttcatttttccttctttattgtt 7602995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 12946724 - 12946686
Alignment:
Q  57 gaagaatgatattttgacattcaattttcaataactttt 95  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  12946724 gaagaatgatattttgacatccaattttcaataattttt 12946686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 37792151 - 37792054
Alignment:
Q  135 tctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattggatgtcaaaatatcattt 233  Q
    ||||||||||||||| |||||||| ||||  || ||||||||  || ||||||  |||||||||||| || || |||||| | ||| ||||||||||||    
T  37792151 tctcttcctttttctctctctattattattgtctaataagaa-ggaagaaaaaagttgtccctaaaaattatttaaaattagttgtgaaaatatcattt 37792054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 12946513 - 12946554
Alignment:
Q  54 aaagaagaatgatattttgacattcaattttcaataactttt 95  Q
    ||||| ||||||||||||||||| |||||||||| |||||||    
T  12946513 aaagatgaatgatattttgacatccaattttcaacaactttt 12946554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 36023136 - 36023267
Alignment:
Q  103 ctctctattatactctcgttatacttttattctctcttcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaag 202  Q
    |||||| | |||||||| ||||||||||||| |||||  ||| || |||||||  ||||||  |||||| | ||  |||||||||||||||| |  |||     
T  36023136 ctctctctcatactctcattatacttttattttctct--cttcttttttctct--tgttattgtccaattaaaagggaggaaaaagattgtcacccaaaa 36023231  T
Q  203 ttgttgaaaattggatgtcaaaatatcatttttctt 238  Q
    || || |||||||  ||||||||||||||| |||||    
T  36023232 ttatttaaaattgattgtcaaaatatcattcttctt 36023267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 36023269 - 36023232
Alignment:
Q  53 taaagaagaatgatattttgacattcaattttcaataa 90  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  36023269 taaagaagaatgatattttgacaatcaattttaaataa 36023232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 44712490 - 44712605
Alignment:
Q  119 cgttatacttttattctctct--tcctttttctttctctattgttatcatccaataagaatagaggaaaaagattgtccctaaaagttgttgaaaattgg 216  Q
    |||| |||||||||||||| |  || ||||||| ||||||||| |||    ||||||||||||||||||||| |||||    ||||||||  ||||||||    
T  44712490 cgttgtacttttattctctttattcttttttctctctctattgctattgctcaataagaatagaggaaaaaggttgtcatccaaagttgtctaaaattgg 44712589  T
Q  217 atgtcaaaatatcatt 232  Q
     | | |||||||||||    
T  44712590 ttattaaaatatcatt 44712605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 749 - 677
Alignment:
Q  87 ataacttttgtgacaactctctattatactctcgttatacttttattctctcttcctttttctttctctattgtt 161  Q
    ||||||||| |||||||||||| |||||||| ||||||  | ||||||||||||| |||||| |||| |||||||    
T  749 ataactttt-tgacaactctct-ttatactcgcgttatgttcttattctctcttcatttttccttctttattgtt 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 6122 - 6038
Alignment:
Q  146 ttctttctctattgttatcatccaataagaatagaggaaaaa-gattgtccctaaaagttgttgaaaattggatgtcaaaatatca 230  Q
    |||| ||||||||||| | |||||||||||| |||||||||| | ||||| | ||| |||||| ||||||||||||  ||||||||    
T  6122 ttctctctctattgtttttatccaataagaagagaggaaaaatggttgtcac-aaatgttgtttaaaattggatgtacaaatatca 6038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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