View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_37 (Length: 320)
Name: NF0545_low_37
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 96 - 284
Target Start/End: Original strand, 43024083 - 43024271
Alignment:
| Q |
96 |
tcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttcacatagatatcataaacttcaacac |
195 |
Q |
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| T |
43024083 |
tcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttcacatagatatcataaacttcaacac |
43024182 |
T |
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| Q |
196 |
tcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgagaaaacaccgctcataggatctctgctc |
284 |
Q |
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| T |
43024183 |
tcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgagaaaacaccgctcataggatcactgctc |
43024271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 43054831 - 43054915
Alignment:
| Q |
159 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaata |
243 |
Q |
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| T |
43054831 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaata |
43054915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 43049307 - 43049401
Alignment:
| Q |
169 |
tcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgagaaaaca |
263 |
Q |
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| T |
43049307 |
tcacatagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagcacgaaaacatgttgtcctgagaaaaca |
43049401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 43062081 - 43062194
Alignment:
| Q |
158 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgag |
257 |
Q |
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| T |
43062081 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaacaacttttgtcctaag |
43062180 |
T |
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| Q |
258 |
aaaacaccgctcat |
271 |
Q |
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||||| || ||||| |
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| T |
43062181 |
aaaacgccactcat |
43062194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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