View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_38 (Length: 293)
Name: NF0545_low_38
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 84 - 283
Target Start/End: Original strand, 33117205 - 33117402
Alignment:
| Q |
84 |
ggattaccagcttaaaaaataagtggaatgaat--------tgtgaatataaaattatactactcaacatttggtaaattagagctttcactgtttcaca |
175 |
Q |
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| T |
33117205 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaattatgctactcaacatttggtaaattagagctttcactgtttcaca |
33117304 |
T |
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| Q |
176 |
tctcaaatatctaatcgttttgtctttttgttttcaatattctttattcacgctcattcacaatgatggcaaggattcttgcttggtgtttactatactt |
275 |
Q |
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| T |
33117305 |
tctcaaatatctaatcgttttgtctttttgttttcaatattcttt----------attcacaatgatggcaaggattcttgcttggtgtttactatactt |
33117394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 33117131 - 33117163
Alignment:
| Q |
13 |
gtttatgactattttcttaggatctgcattaat |
45 |
Q |
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| T |
33117131 |
gtttatgactattttcttaggatctgcattaat |
33117163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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