View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_4 (Length: 551)
Name: NF0545_low_4
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 118 - 543
Target Start/End: Original strand, 18218765 - 18219190
Alignment:
| Q |
118 |
gtatgcagcaggacttagcagcattactcttggccaaaaggagcttcattaaggttaataaatgaaccattcttggtgatggaggtagtgattgtggttt |
217 |
Q |
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| T |
18218765 |
gtatgcagcaggacttagcagcattactcttggccaaaaggagcttcattaaggttaataaatgaaccattcttggtgatggaggtagtgattgtggttt |
18218864 |
T |
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| Q |
218 |
ttgtggtctctactggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaac |
317 |
Q |
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| T |
18218865 |
ttgtggtctctagtggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaac |
18218964 |
T |
|
| Q |
318 |
aggagaagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggttggg |
417 |
Q |
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| T |
18218965 |
aggagaagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggttggg |
18219064 |
T |
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| Q |
418 |
gttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaac |
517 |
Q |
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| T |
18219065 |
gttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaac |
18219164 |
T |
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| Q |
518 |
cacttttcagcctttctatctctgct |
543 |
Q |
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| T |
18219165 |
cacttttcagcctttctatctttgct |
18219190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 18218677 - 18218738
Alignment:
| Q |
30 |
cctataagttggctcaatctactattaccaacagagtctcaaaatgatgtggcttctttcaa |
91 |
Q |
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| T |
18218677 |
cctataagttggctcaatctactattaccaacagagtctcaaaatgatgtggcttctttcaa |
18218738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 43010850 - 43010984
Alignment:
| Q |
191 |
tggtgatggaggtagtgattgtggtttttgtggtctctactggaggagaaagatgaggggaaaagggtcca-----gtgacatgtgtcaaagtagttgtg |
285 |
Q |
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| T |
43010850 |
tggtgatggtggtagtgattggggtttttgtggtctctagtggaggagaaagataagtggaaaagggtccaatgacatgacatgtgtcaaagtagttgtg |
43010949 |
T |
|
| Q |
286 |
ctcacagggcgcctctctgctaatggcttaacagg |
320 |
Q |
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| T |
43010950 |
ctcacagggcgcctctctgctaatggcttaacagg |
43010984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 504
Target Start/End: Original strand, 43010995 - 43011093
Alignment:
| Q |
406 |
gctgaggttggggttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttg |
504 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||| |||||||||||||||||||| |||| |
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| T |
43010995 |
gctgaggatggggttgggaccacagtgtgttcatcaaggttggttacaacatgtggatacaaactcgtatttgaccacataaaggtccctcttgttttg |
43011093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 43010730 - 43010775
Alignment:
| Q |
30 |
cctataagttggctcaatctactattaccaacagagtctcaaaatg |
75 |
Q |
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| T |
43010730 |
cctataagttggctcaatctactattaccaacagagtctcaaaatg |
43010775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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