View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_41 (Length: 285)
Name: NF0545_low_41
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 34430736 - 34430560
Alignment:
| Q |
12 |
gaatatccagggcagacataatggcatctaaagtcgtggttgtggcagttgctgtcattgcaaggatagaacctacattaagactcttatgaagtagtga |
111 |
Q |
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| T |
34430736 |
gaatatccagggcagacataatggcatctaaagtcgtggttgtggcagttgctgtcattgcaaggatagaacctacattaagactcttatgaagcagtga |
34430637 |
T |
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| Q |
112 |
tgctctaagtcccatgaatgaaggtcggaaattgtgagacctgtatgaatttcaaaatataaagatcaacaaggagg |
188 |
Q |
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| T |
34430636 |
tgctctaagtctcatgaatgaaggtcggaaattgtgagacctgtataaatttcaaaatataaagatcaacaaggagg |
34430560 |
T |
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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 4301752 - 4301671
Alignment:
| Q |
191 |
cacagaggtggagctacattctgatttgtggtcttgtggtgctaaggagagccatgacatgaattcgttaattggcttattaaggtttgt |
280 |
Q |
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| T |
4301752 |
cacagaggtggagctacattctgatttgtggt--------gccaaggagagccatgacatgaattcgttaattggcttattaaggtttgt |
4301671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 4296281 - 4296185
Alignment:
| Q |
191 |
cacagaggtggagctacattctgatttgtggtcttgtggtgct---------aaggagagccatgacatgaattcgttaattggcttattaaggttt |
278 |
Q |
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| T |
4296281 |
cacagagctggagctacattctgatctgtggtcttgtggtgattgtggtgccaaggagagccatgacatgaattcattaattggcttattatggttt |
4296185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 4312022 - 4311971
Alignment:
| Q |
224 |
ttgtggtgctaaggagagccatgacatgaattcgttaattggcttattaagg |
275 |
Q |
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||||||||| ||||| |||||||||||| |||| | |||||||||||||||| |
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| T |
4312022 |
ttgtggtgccaaggatagccatgacatggattcatcaattggcttattaagg |
4311971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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