View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0545_low_42 (Length: 280)
Name: NF0545_low_42
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 47281043 - 47281238
Alignment:
| Q |
48 |
acttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47281043 |
acttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatg |
47281142 |
T |
|
| Q |
148 |
tctatgttttctcgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattc |
243 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47281143 |
tctatgttttcttgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattc |
47281238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 49061169 - 49061346
Alignment:
| Q |
48 |
acttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatg |
147 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||| |||||||| | |||||||||||| |||||||| || ||| |||||||||||||||| || |
|
|
| T |
49061169 |
acttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccaggtcaaacttg |
49061268 |
T |
|
| Q |
148 |
tctatgttttctcgcaacatagtcaatgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataa |
225 |
Q |
| |
|
||| ||||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49061269 |
tctttgttttctctcaacatggtcaacgccgttattgcttgactagttgtggttactgcaatccccagtcagaaataa |
49061346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 47275387 - 47275529
Alignment:
| Q |
70 |
tcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatag |
169 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
47275387 |
tcaagttccacaagttcaagcagcttaagtccatccatgtcaggcaggtgcacatcagcgattaccaggtcaaacttgtctttgttttctcgcaacatag |
47275486 |
T |
|
| Q |
170 |
tcaatgcagttattgcttcactagttgtggttactgcaatccc |
212 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
47275487 |
tcaatgccgtttttgcttgactagttgtcgttactgcaatccc |
47275529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 34316113 - 34316047
Alignment:
| Q |
52 |
atgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
|
|
| T |
34316113 |
atgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 48870454 - 48870569
Alignment:
| Q |
51 |
tatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtct |
150 |
Q |
| |
|
||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| | | |||||| |||||||| ||| | |
|
|
| T |
48870454 |
tatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaaattgttt |
48870553 |
T |
|
| Q |
151 |
atgttttctcgcaaca |
166 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
48870554 |
ttgttttctctcaaca |
48870569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 2888628 - 2888554
Alignment:
| Q |
48 |
acttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
122 |
Q |
| |
|
|||||||||||| | |||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
|
|
| T |
2888628 |
acttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1360 times since January 2019
Visitors: 3669