View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_low_46 (Length: 260)

Name: NF0545_low_46
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_low_46
NF0545_low_46
[»] chr1 (13 HSPs)
chr1 (127-244)||(50269524-50269641)
chr1 (29-107)||(50269664-50269742)
chr1 (125-177)||(27698752-27698804)
chr1 (74-107)||(29756325-29756358)
chr1 (125-177)||(2219563-2219615)
chr1 (125-177)||(5040691-5040743)
chr1 (129-177)||(6784947-6784995)
chr1 (125-177)||(8327657-8327709)
chr1 (129-161)||(28908037-28908069)
chr1 (125-177)||(43895787-43895839)
chr1 (125-177)||(45889364-45889416)
chr1 (125-177)||(49494278-49494330)
chr1 (125-177)||(51848812-51848864)
[»] chr2 (6 HSPs)
chr2 (132-177)||(33880106-33880151)
chr2 (125-176)||(28572151-28572202)
chr2 (125-177)||(3100340-3100392)
chr2 (125-177)||(7213415-7213467)
chr2 (125-177)||(33751401-33751453)
chr2 (125-177)||(44534602-44534654)
[»] chr7 (8 HSPs)
chr7 (125-177)||(2846791-2846843)
chr7 (125-177)||(34963926-34963978)
chr7 (125-177)||(39693731-39693783)
chr7 (125-177)||(40590940-40590992)
chr7 (125-175)||(48981319-48981369)
chr7 (125-177)||(7425994-7426046)
chr7 (125-177)||(11616501-11616553)
chr7 (125-177)||(27621774-27621826)
[»] chr5 (6 HSPs)
chr5 (125-177)||(4044592-4044644)
chr5 (126-177)||(6610776-6610827)
chr5 (125-174)||(38978695-38978744)
chr5 (125-177)||(9426669-9426721)
chr5 (125-177)||(11099593-11099645)
chr5 (125-177)||(13597969-13598021)
[»] chr3 (3 HSPs)
chr3 (125-177)||(41031512-41031564)
chr3 (126-177)||(43640680-43640731)
chr3 (183-227)||(2683206-2683249)
[»] chr8 (4 HSPs)
chr8 (126-177)||(33191024-33191075)
chr8 (125-175)||(34133021-34133071)
chr8 (174-227)||(29636957-29637009)
chr8 (125-177)||(5391988-5392040)
[»] chr4 (7 HSPs)
chr4 (131-177)||(34791067-34791113)
chr4 (131-177)||(48400745-48400791)
chr4 (125-177)||(18849874-18849926)
chr4 (125-173)||(33047438-33047486)
chr4 (125-177)||(42185911-42185963)
chr4 (125-177)||(49812169-49812221)
chr4 (129-177)||(51527363-51527411)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 50269641 - 50269524
Alignment:
Q  127 tcccaaaataattgagtcatttcacattttaatacattatcaattacttttgggtaaaatgcacttttggcccccctatatttacctccgtagcaatttt 226  Q
    ||||||||||||| ||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  50269641 tcccaaaataatttagtcatttttcatttcaatacattatcaattacttttggctaaaatgcacttttggcccccctatgtttacctccgtagcaatttt 50269542  T
Q  227 gcctcacgtgccaattcc 244  Q
    ||||||||||||||||||    
T  50269541 gcctcacgtgccaattcc 50269524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 50269742 - 50269664
Alignment:
Q  29 gtttttgctctctctttatttcaaacaccaaacacatctaagtcgtactccctccgtcccataataacatagccatttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50269742 gtttttgctctctctttatttcaaacaccaaacacatctaagtcgtactccctccgtcccataataacatagccatttg 50269664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 27698752 - 27698804
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  27698752 tgtcctaaaataattgagtcatttcacttttcaatacaatattaattactttt 27698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 29756358 - 29756325
Alignment:
Q  74 tactccctccgtcccataataacatagccatttg 107  Q
    |||||||||||||||||||||||| |||||||||    
T  29756358 tactccctccgtcccataataacagagccatttg 29756325  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 2219615 - 2219563
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||||||||  |||||||| ||| |||||| ||| ||||||||||    
T  2219615 tgtcccaaaataattgaaccatttcacttttcaatacaatattaattactttt 2219563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 5040743 - 5040691
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| |||||||| |||||||||||| |||||||||| ||| |||| |||||    
T  5040743 tgtcctaaaataatagagtcatttcactttttaatacaatattaattgctttt 5040691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 6784947 - 6784995
Alignment:
Q  129 ccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||| ||| |||||| ||| ||||||||||    
T  6784947 ccaaaataattgaatcatttcacttttcaatacaatattaattactttt 6784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 8327657 - 8327709
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| |||| |||||||| ||| ||||||| || ||||||||||    
T  8327657 tgtcccaaaataaatgagccatttcacttttcaatacatcattaattactttt 8327709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 28908037 - 28908069
Alignment:
Q  129 ccaaaataattgagtcatttcacattttaatac 161  Q
    ||||||||||||||||||||||| |||||||||    
T  28908037 ccaaaataattgagtcatttcactttttaatac 28908069  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 43895787 - 43895839
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| |||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  43895787 tgtctcaaaataaatgagtcatttcacttttcaatacaatattaattactttt 43895839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 45889416 - 45889364
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| ||||| | || ||||||||||    
T  45889416 tgtcccaaaataagtgagtcatttcacttttcaatacgtcattaattactttt 45889364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 49494330 - 49494278
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| ||||||||| |||||||||||| ||| |||||| ||| ||||||||||    
T  49494330 tgtctcaaaataatcgagtcatttcacttttcaatacactattaattactttt 49494278  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 51848864 - 51848812
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| |||| |||||||| ||| ||||||| || ||||||||||    
T  51848864 tgtcccaaaataagtgagacatttcacttttcaatacatcattaattactttt 51848812  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 33880106 - 33880151
Alignment:
Q  132 aaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||    
T  33880106 aaataattgagtcatttcactttttaatacaatattaattactttt 33880151  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 28572151 - 28572202
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattacttt 176  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| |||||||||    
T  28572151 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattacttt 28572202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 3100340 - 3100392
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| |||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  3100340 tgtctcaaaataactgagtcatttcacttttcaatacaatattaattactttt 3100392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 7213415 - 7213467
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||||| | ||||||||| ||| |||||| ||| ||||||||||    
T  7213415 tgtcccaaaataattaaatcatttcacttttcaatacaatattaattactttt 7213467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 33751401 - 33751453
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| || ||||||||||    
T  33751401 tgtccaaaaataaatgagtcatttcacttttcaatacatcattaattactttt 33751453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 44534654 - 44534602
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| |||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  44534654 tgtctcaaaataactgagtcatttcacttttcaatacaatattaattactttt 44534602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 2846843 - 2846791
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| ||||||| || ||||||||||    
T  2846843 tgtcccaaaataagtgagtcatttcacttttcaatacatcattaattactttt 2846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 34963978 - 34963926
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  34963978 tgtcccaaaataactgagtcatttcacttttcaatacagtattaattactttt 34963926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 39693731 - 39693783
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| ||||||| || ||||||||||    
T  39693731 tgtcccaaaataagtgagtcatttcacttttcaatacatcattaattactttt 39693783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 40590992 - 40590940
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  40590992 tgtcccaaaataactgagtcatttcacttttaaatacaatattaattactttt 40590940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 48981319 - 48981369
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactt 175  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| ||||||||    
T  48981319 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattactt 48981369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 7426046 - 7425994
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| |||| |||||||| ||| |||||| ||| ||||||||||    
T  7426046 tgtcccaaaataactgagccatttcacttttcaatacaatattaattactttt 7425994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 11616501 - 11616553
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| |||| |||||||| ||| |||||| ||| ||||||||||    
T  11616501 tgtcccaaaataactgagccatttcacttttcaatacaatattaattactttt 11616553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 27621774 - 27621826
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| ||||| |||||| ||||||||| ||| |||||| ||||||||||||||    
T  27621774 tgtctcaaaaaaattgattcatttcacttttcaatacaatatcaattactttt 27621826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 4044644 - 4044592
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||||||| ||||||||| ||| |||||| ||| ||||||||||    
T  4044644 tgtcccaaaataattgaatcatttcacttttcaatacaatattaattactttt 4044592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 6610776 - 6610827
Alignment:
Q  126 gtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  6610776 gtcccaaaataactgagtcatttcacttttaaatacaatattaattactttt 6610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 38978695 - 38978744
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattact 174  Q
    |||||||||||||||||  |||||||| ||| |||||| |||||||||||    
T  38978695 tgtcccaaaataattgatccatttcacttttcaatacaatatcaattact 38978744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 9426721 - 9426669
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| ||||||||||| ||||||||| ||| |||||| ||| ||||||||||    
T  9426721 tgtcctaaaataattgactcatttcacttttcaatacaatattaattactttt 9426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 11099645 - 11099593
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||  |||||| ||| ||||||||||    
T  11099645 tgtcccaaaataactgagtcatttcactttccaatacaatattaattactttt 11099593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 13597969 - 13598021
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| ||||||||||| ||||||||| ||| |||||| ||| ||||||||||    
T  13597969 tgtcctaaaataattgactcatttcacttttcaatacaatattaattactttt 13598021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 41031512 - 41031564
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| |||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  41031512 tgtcgcaaaataattgagtcatttcacttttcaatacaatattaattactttt 41031564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 43640731 - 43640680
Alignment:
Q  126 gtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  43640731 gtcccaaaataactgagtcatttcacttttcaatacaatattaattactttt 43640680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 2683249 - 2683206
Alignment:
Q  183 aaatgcacttttggcccccctatatttacctccgtagcaattttg 227  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||    
T  2683249 aaatgcacttttggccccc-tatatttgccaccgtagcaattttg 2683206  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 33191075 - 33191024
Alignment:
Q  126 gtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  33191075 gtcccaaaataactgagtcatttcacttttcaatacaatattaattactttt 33191024  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 34133021 - 34133071
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactt 175  Q
    ||||||||||||| ||||||||| ||| |||||||||| ||| ||||||||    
T  34133021 tgtcccaaaataactgagtcattacactttttaatacaatattaattactt 34133071  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 29637009 - 29636957
Alignment:
Q  174 ttttgggtaaaatgcacttttggcccccctatatttacctccgtagcaattttg 227  Q
    |||||| |||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  29637009 ttttggctaaaatgcacttttgg-ccctctatatttggctccgtagcaattttg 29636957  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 5391988 - 5392040
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||| |||||||| ||||||||||||| ||| |||||| ||| ||||||||||    
T  5391988 tgtctcaaaataactgagtcatttcacttttcaatacaatattaattactttt 5392040  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 34791113 - 34791067
Alignment:
Q  131 aaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    |||||||||||||||||| || |||||||||| ||| ||||||||||    
T  34791113 aaaataattgagtcattttactttttaatacaatattaattactttt 34791067  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 48400791 - 48400745
Alignment:
Q  131 aaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  48400791 aaaataattgagtcatttcacttttcaatacaatattaattactttt 48400745  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 18849926 - 18849874
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| |||| | ||| ||||||||||    
T  18849926 tgtcccaaaataactgagtcatttcacttttcaataaaatattaattactttt 18849874  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 33047438 - 33047486
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattac 173  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| ||||||    
T  33047438 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattac 33047486  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 42185963 - 42185911
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| |||||||||| || ||| ||||||| || ||||||||||    
T  42185963 tgtcccaaaataagtgagtcattttacttttcaatacatcattaattactttt 42185911  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 49812169 - 49812221
Alignment:
Q  125 tgtcccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| ||||| ||||    
T  49812169 tgtcccaaaataactgagtcatttcacttttcaatacaatattaattattttt 49812221  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 51527363 - 51527411
Alignment:
Q  129 ccaaaataattgagtcatttcacattttaatacattatcaattactttt 177  Q
    ||||| ||| ||||||||||||| |||||||||| ||| ||||||||||    
T  51527363 ccaaagtaactgagtcatttcactttttaatacaatattaattactttt 51527411  T

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