View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_47 (Length: 255)
Name: NF0545_low_47
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 9221556 - 9221675
Alignment:
| Q |
11 |
cagagatatcacagcaagcacaattctttttcccttattcccatattctgatcctgttaatgaacttatcttcaagatctcttggacacttgccttcatt |
110 |
Q |
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| T |
9221556 |
cagagatatcacagcaagcacaattctttttcccttattcccatattctgatcctgttaatgaacttatcttcaagatctcttggacacttgccttcatt |
9221655 |
T |
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| Q |
111 |
ttctgcatcaggggacacat |
130 |
Q |
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| T |
9221656 |
ttctgcatcaggggacacat |
9221675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 9221714 - 9221802
Alignment:
| Q |
167 |
atatattcattaattttacaacattattcatgttaacagaaatggttgcataccagtctcatgaagggttccaagaagagcaatggctc |
255 |
Q |
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| T |
9221714 |
atatattcattcattttataacattattcatgttaacagaaatagttgcataccagtctcatgaagggttccaagaagagcaatggctc |
9221802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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