View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_50 (Length: 251)
Name: NF0545_low_50
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_50 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 21754 - 21975
Alignment:
| Q |
30 |
cttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacct |
129 |
Q |
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| T |
21754 |
cttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacct |
21853 |
T |
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| Q |
130 |
ttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaa |
229 |
Q |
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||||||||||| ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21854 |
ttatttggtacgacaaacaagcaatacgagtggttgccaagctcaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaa |
21953 |
T |
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| Q |
230 |
aattagggaattttgttatatc |
251 |
Q |
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|||||||||| ||||||||||| |
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| T |
21954 |
aattagggaactttgttatatc |
21975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 13716 - 13930
Alignment:
| Q |
30 |
cttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacct |
129 |
Q |
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||||||||||||| |||||| |||||||||| |||| |||| |||||| || | |||| ||||| || |||||| |||||||||||||||||| | | |
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| T |
13716 |
cttggaacaatcacttggagcaaaggaaacttttttcccttcgagatcatattctactagaaaatcaacgtgtgctatatttccaaagatggaaagatca |
13815 |
T |
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| Q |
130 |
ttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaa |
229 |
Q |
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| T |
13816 |
ttggatggtatggccaacaagcaatacgagttgttgccaagaacaccaagtaatttctgaggtttaagggtaacatcggctcccgtgaaatgaaacacga |
13915 |
T |
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| Q |
230 |
aattagggaattttg |
244 |
Q |
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|||||||||| |||| |
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| T |
13916 |
aattagggaactttg |
13930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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