View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_52 (Length: 251)
Name: NF0545_low_52
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 28493073 - 28492850
Alignment:
| Q |
11 |
cacagactcacctaagcgtt------atgaggatgtgatacatttgggaagaaaaatacatcatgggtttctggaattacttcttcgcaaataggaggag |
104 |
Q |
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| T |
28493073 |
cacagactcacctaagcgttgcgactacgaggatgtgatacatttgggaagaaaaatacatcataggtttctggaattacttcttcgcaaataagaggag |
28492974 |
T |
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| Q |
105 |
atttggagattagcgttgctataattagattgttgaaaattatccaaacacttttaaaaactcaaataaggaaatcatcttgcctatttgatgcaagacg |
204 |
Q |
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| T |
28492973 |
atttggagattagggttgatataattagattgttgaaaattatccaaacacttttaaaaactcaaataaggaaatcatcttgcctatttgatgcaagacg |
28492874 |
T |
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| Q |
205 |
ttga-gaatactacaaaggagaaa |
227 |
Q |
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| T |
28492873 |
ttgaggaatactacaaaggagaaa |
28492850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 28478769 - 28478632
Alignment:
| Q |
69 |
gggtttctggaattacttcttcgcaaataggaggagatttggagattagcgttgctataattagattgttgaaaattatccaaacacttttaaaaactca |
168 |
Q |
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|||||||| ||| |||||||| |||||||||| |||||||||||||||| |||| | ||||||||||||| ||||||||||| |||| | ||||||| |
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| T |
28478769 |
gggtttctagaactacttcttggcaaataggatgagatttggagattagggttgattcaattagattgttggaaattatccaagcactct---aaactca |
28478673 |
T |
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| Q |
169 |
aataaggaaatcatcttgcctatttgatgcaagacgttgag |
209 |
Q |
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| T |
28478672 |
aatagggaaaccatcttgcctctttgatgcaagatgttgag |
28478632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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