View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_55 (Length: 247)
Name: NF0545_low_55
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 49764842 - 49765085
Alignment:
| Q |
6 |
ccaacaatatgggatccaaacacttttattttgatgaattttcttaggctgatgatgatattccaggacccttctc--tccagctatgcacatggaacgg |
103 |
Q |
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| T |
49764842 |
ccaacaataagggatccaaacacttttattttgatgaattttcttaggctgatgatgatatcccaggacccttctctctccagctatgcacatggaacgg |
49764941 |
T |
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| Q |
104 |
aggagactagagagattgcggtaacaattgcaagtactgctgattaggtgcaaacgagagccattgaataaatgccacactctatattgctgctagtaca |
203 |
Q |
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| T |
49764942 |
aggagactagagagattccggtaacaattgcaagtactgctgattaggtgcaaacgagagccattgaataaatgccacactctatattgctgctagtaca |
49765041 |
T |
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| Q |
204 |
tgatctactcattgaatgccaatcgaggggaccactaccaccat |
247 |
Q |
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| T |
49765042 |
tgatctactcattgaatgccaatcgaggggaccactaccaccat |
49765085 |
T |
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