View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_61 (Length: 213)
Name: NF0545_low_61
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4301686 - 4301848
Alignment:
| Q |
1 |
ccaattaacgaattcatgtcatggctctccttagcaccacaagaccacaaatcagaatgtagctccacctctgtgtttccttnnnnnnnnnnttgtttaa |
100 |
Q |
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| T |
4301686 |
ccaattaacgaattcatgtcatggctctccttggcaccacaa--------atcagaatgtagctccacctctgtgtttccttaaaaaaaaa-ttgtttaa |
4301776 |
T |
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| Q |
101 |
ctatatatatttataaactagatcaatcactagggtgtttctctattttgtaggacttggtcttagtcctat |
172 |
Q |
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| T |
4301777 |
ctatatatatttataaactagatcaatcattagggtgtttctctattttgtaggacttggtcttagtcctat |
4301848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4296198 - 4296285
Alignment:
| Q |
1 |
ccaattaacgaattcatgtcatggctctccttagcacc---------acaagaccacaaatcagaatgtagctccacctctgtgtttc |
79 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
4296198 |
ccaattaatgaattcatgtcatggctctccttggcaccacaatcaccacaagaccacagatcagaatgtagctccagctctgtgtttc |
4296285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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