View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_8 (Length: 476)
Name: NF0545_low_8
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 448
Target Start/End: Complemental strand, 30737960 - 30737520
Alignment:
| Q |
9 |
caacaatatagtgagtggcgcatcaaggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttatt |
108 |
Q |
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| T |
30737960 |
caaccatatagtgagtggcgcatcaaggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttatt |
30737861 |
T |
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| Q |
109 |
ataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaaaaggaaat |
208 |
Q |
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| T |
30737860 |
ataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaagaggaaat |
30737761 |
T |
|
| Q |
209 |
ttttcctttgtattgagtacgtagtaatctcaacaagtttgtgcatttatcaagaaggtatttcttgatgcaaatttgacacacttaaatagagtctttc |
308 |
Q |
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| T |
30737760 |
ttttcctttgtattgagtacgtagtaatctcaacaagtttctgcatttatcaagaaggtatttcttgatgtaaatttgacacacttaaatagaggctttc |
30737661 |
T |
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| Q |
309 |
tctatgctgaagtggaggaatctgatatctgagtgaaggatcttcacagacatgacttattatgcttgggtcaaggcataatttaacat-gatgtatata |
407 |
Q |
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|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
30737660 |
tctatgctgaagtggacgagtctgatatatgagtgaaggatcttcacagacatgacttattatgcttgagtcaaggcataagttaacatggatgtatata |
30737561 |
T |
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| Q |
408 |
aaacatctatgatgcttcttttgtattggaggcttccaata |
448 |
Q |
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| T |
30737560 |
aaacatctatgatacttcttttgtattggaggcttccaata |
30737520 |
T |
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