View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0546_low_1 (Length: 610)
Name: NF0546_low_1
Description: NF0546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0546_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 70 - 407
Target Start/End: Complemental strand, 7109919 - 7109577
Alignment:
| Q |
70 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| |
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| T |
7109919 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagac |
7109820 |
T |
|
| Q |
170 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcct-----tgat |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7109819 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgat |
7109720 |
T |
|
| Q |
265 |
tttgttgattggaaggaggctaatcaacttatccatcttcctactagaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7109719 |
tttgttgattggaaggaggctaatcaacttatccatcttcctaccaaaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
7109620 |
T |
|
| Q |
365 |
aatataaatgactcgatagagccatttgcaatcaacaatggct |
407 |
Q |
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| T |
7109619 |
aatataagtgacttgacagagccatttgcaatcaacaatggct |
7109577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 409 - 610
Target Start/End: Complemental strand, 7109285 - 7109084
Alignment:
| Q |
409 |
atttcttccaaacttattggaacaatgtgaataatgatgtaactaatgcggttttaaatttctttgtagatgactggatgctccctaactacaatgccaa |
508 |
Q |
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| T |
7109285 |
atttcttccaaacttattggaacaatgtgaatactgatgtaactaatgcggttttaaatttctttgtagatgattggatgctccctaactacaatgccaa |
7109186 |
T |
|
| Q |
509 |
tgttattattcccatacctaagtttcaaggtgctgactgtgtggagcaatataggcctatagctttagataacttcaagtttaaaattataaccaaagtg |
608 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7109185 |
tgttattattcccatacctaagtttcaaggtattgactgtgtggagcaatatagacctatagctttagataacttcaagtttaaaattataaccaaagtg |
7109086 |
T |
|
| Q |
609 |
at |
610 |
Q |
| |
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|| |
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| T |
7109085 |
at |
7109084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
| Q |
142 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga |
241 |
Q |
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||||| || |||| |||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
7110772 |
tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga |
7110871 |
T |
|
| Q |
242 |
accaaat |
248 |
Q |
| |
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||||||| |
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| T |
7110872 |
accaaat |
7110878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
| Q |
150 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata |
249 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
9987749 |
gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg |
9987651 |
T |
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| Q |
250 |
tggatgatcct |
260 |
Q |
| |
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|||| |||||| |
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| T |
9987650 |
tggacgatcct |
9987640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
| Q |
142 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc |
220 |
Q |
| |
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||||| || |||| ||||||||||| |||||||||||||||||||||||| |||||| | |||||| ||||||||||| |
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| T |
9986561 |
tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc |
9986483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
| Q |
148 |
tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt |
230 |
Q |
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| T |
9992790 |
tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt |
9992710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
| Q |
159 |
ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa |
242 |
Q |
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||||| ||||||| || ||| || |||||||||| |||||| ||||||||||||||| || |||| |||||||||||||||| |
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| T |
9991811 |
ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa |
9991728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
| Q |
77 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc |
125 |
Q |
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|||||||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
26169914 |
ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc |
26169962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
| Q |
150 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
237 |
Q |
| |
|
||||| ||||||| || || |||| |||||| |||| | |||||||||||||| | | ||||| |||||||| || |||||||||||| |
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|
| T |
29873648 |
gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct |
29873561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
| Q |
150 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
237 |
Q |
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| T |
15841477 |
gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct |
15841390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
| Q |
189 |
ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
237 |
Q |
| |
|
|||||||||||||| | | |||| |||||||||||| |||||||||||| |
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|
| T |
16524451 |
ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct |
16524499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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