View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0546_low_11 (Length: 249)

Name: NF0546_low_11
Description: NF0546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0546_low_11
NF0546_low_11
[»] chr4 (4 HSPs)
chr4 (1-239)||(20019657-20019895)
chr4 (8-180)||(20016077-20016250)
chr4 (98-178)||(22672109-22672189)
chr4 (117-167)||(11032910-11032960)
[»] chr2 (4 HSPs)
chr2 (99-210)||(20537975-20538086)
chr2 (78-167)||(36577366-36577456)
chr2 (99-155)||(6538846-6538902)
chr2 (114-155)||(7174371-7174412)
[»] chr3 (42 HSPs)
chr3 (78-209)||(803180-803311)
chr3 (90-197)||(989366-989473)
chr3 (76-215)||(2459227-2459366)
chr3 (98-227)||(13479515-13479647)
chr3 (91-215)||(2696707-2696831)
chr3 (105-209)||(1940568-1940672)
chr3 (111-177)||(4157939-4158005)
chr3 (92-167)||(2644338-2644413)
chr3 (92-167)||(2659128-2659203)
chr3 (115-194)||(3754573-3754652)
chr3 (90-169)||(4142108-4142187)
chr3 (115-209)||(3745966-3746060)
chr3 (90-215)||(956333-956458)
chr3 (92-169)||(1931130-1931207)
chr3 (105-209)||(968629-968733)
chr3 (106-174)||(1007454-1007522)
chr3 (111-174)||(1022482-1022545)
chr3 (120-178)||(997565-997623)
chr3 (120-178)||(1013955-1014013)
chr3 (105-167)||(2442039-2442101)
chr3 (116-166)||(2631358-2631408)
chr3 (100-209)||(1936964-1937073)
chr3 (112-205)||(7432050-7432143)
chr3 (116-167)||(2456249-2456300)
chr3 (92-167)||(2476634-2476709)
chr3 (92-167)||(7334215-7334290)
chr3 (92-167)||(9561961-9562036)
chr3 (92-166)||(2492083-2492157)
chr3 (116-166)||(7442977-7443027)
chr3 (111-212)||(2678394-2678495)
chr3 (118-167)||(13498224-13498273)
chr3 (116-156)||(746383-746423)
chr3 (116-208)||(1891064-1891156)
chr3 (111-155)||(44001607-44001651)
chr3 (116-167)||(754609-754660)
chr3 (116-167)||(771499-771550)
chr3 (92-167)||(7324407-7324482)
chr3 (92-167)||(9565805-9565880)
chr3 (111-212)||(2686307-2686411)
chr3 (118-168)||(9608346-9608396)
chr3 (115-165)||(23197014-23197064)
chr3 (92-136)||(9594600-9594644)
[»] chr5 (15 HSPs)
chr5 (111-178)||(23766857-23766924)
chr5 (111-178)||(23816705-23816772)
chr5 (111-179)||(23861021-23861089)
chr5 (90-169)||(11081811-11081890)
chr5 (118-167)||(20292995-20293044)
chr5 (111-172)||(23769641-23769702)
chr5 (111-172)||(23819489-23819550)
chr5 (111-179)||(23814088-23814156)
chr5 (118-167)||(20301443-20301492)
chr5 (118-155)||(20305868-20305905)
chr5 (118-155)||(20310272-20310309)
chr5 (111-172)||(23764255-23764316)
chr5 (115-215)||(41973469-41973570)
chr5 (117-169)||(3181715-3181767)
chr5 (111-179)||(23732155-23732223)
[»] chr1 (5 HSPs)
chr1 (89-159)||(25609350-25609420)
chr1 (115-168)||(51858605-51858658)
chr1 (113-168)||(51381452-51381507)
chr1 (115-168)||(51756749-51756802)
chr1 (115-168)||(51854946-51854999)
[»] chr8 (1 HSPs)
chr8 (100-209)||(19727839-19727948)
[»] scaffold0044 (1 HSPs)
scaffold0044 (116-168)||(89142-89194)
[»] chr6 (5 HSPs)
chr6 (111-161)||(1442103-1442153)
chr6 (115-165)||(19119065-19119115)
chr6 (115-165)||(19126359-19126409)
chr6 (115-168)||(4183000-4183053)
chr6 (115-168)||(4743844-4743897)
[»] scaffold0200 (1 HSPs)
scaffold0200 (115-215)||(777-878)
[»] chr7 (1 HSPs)
chr7 (113-167)||(1078157-1078211)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20019657 - 20019895
Alignment:
Q  1 aaaatcaatttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaacgttgaacaacatataagatatactaggatcttgca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  20019657 aaaatccatttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaaccttgaacaacatataagatttactaggatcttgca 20019756  T
Q  101 tgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20019757 tgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaa 20019856  T
Q  201 cacacccaaggtcaatttggacacatccaatccttcatc 239  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  20019857 cacacccaaggtcaagttggacacatccactccttcatc 20019895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 20016077 - 20016250
Alignment:
Q  8 atttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaacgttgaacaacatataagatatactaggatcttgcatgttaga 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||| ||| | ||||||||||||||||    
T  20016077 atttgccatttccaatacactgcaacagtactttgtcatcctcaaatgtatataaaaccttgatcaacatatatgatttaccatgatcttgcatgttaga 20016176  T
Q  108 aagagtgaacaatttagtccaagactcttgaattccatattccttcatga-cccaaacatcattaccagaaatt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20016177 aagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaaatt 20016250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 22672109 - 22672189
Alignment:
Q  98 gcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 178  Q
    |||||| ||||| ||||||||||||||||||||| || | | |||||||||||||||| |||||||| || | ||||||||    
T  22672109 gcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaa 22672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  117 caatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||| |||||||||||| | |||| ||||||||||||| |||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 20538086 - 20537975
Alignment:
Q  99 catgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctt 198  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||| ||| ||||||||||||||  ||||||||    
T  20538086 catgttagaaacagtgaacaatttagtccaagattcttaaattccatattcattcatgacccatatatcatgacccgaaattatgcacaaacaatctctt 20537987  T
Q  199 aacacacccaag 210  Q
    ||||||| ||||    
T  20537986 aacacactcaag 20537975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 36577456 - 36577366
Alignment:
Q  78 ataagatatactagg-atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||| ||||||| |||| |||||| ||| |  || ||||||||| |||||||||||| | |||||||||||||||| | |||||||||    
T  36577456 ataagatttactagggatctcgcatgtaagacacggtaaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 6538902 - 6538846
Alignment:
Q  99 catgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcat 155  Q
    ||||||||||| | ||||||||||||||||||| |||| | ||||||| ||||||||    
T  6538902 catgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcat 6538846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 7174371 - 7174412
Alignment:
Q  114 gaacaatttagtccaagactcttgaattccatattccttcat 155  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  7174371 gaacaatctagtccaagaatcttgatttccatattccttcat 7174412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 803180 - 803311
Alignment:
Q  78 ataagatatactaggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaa 177  Q
    ||||||| ||| ||||| |||||||| | | | ||||||||| |||||||||||||||| | |||||||||| ||||| ||||||||||||| |||||||    
T  803180 ataagatttacaaggatattgcatgtgacagacagtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaa 803279  T
Q  178 attatgcacaagaaatctcttaacacacccaa 209  Q
    || ||||||||| |||| || |||| ||||||    
T  803280 atcatgcacaagcaatccctcaacatacccaa 803311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 989473 - 989366
Alignment:
Q  90 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaag 189  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| | |||| || || ||||| ||||||||||||| ||||||||  |||||||||    
T  989473 aggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaag 989374  T
Q  190 aaatctct 197  Q
     |||||||    
T  989373 caatctct 989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 2459366 - 2459227
Alignment:
Q  76 atataagatatactaggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag 175  Q
    |||||| || ||||||||||| |||||| |||||  || |||||||| ||||||||||||| | |||||||||||||||| | ||||||| ||| |||||    
T  2459366 atataatatttactaggatctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccag 2459267  T
Q  176 aaattatgcacaagaaatctcttaacacacccaaggtcaa 215  Q
    |||||||| ||||| |||| || || |||||||| |||||    
T  2459266 aaattatggacaagcaatcactcaatacacccaatgtcaa 2459227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 13479647 - 13479515
Alignment:
Q  98 gcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgaccca---aacatcattaccagaaattatgcacaagaaatc 194  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||   | ||| || ||||| || ||||| |||  ||||    
T  13479647 gcatgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcatgacccagatatcatgatgaccagcaaatatgctcaaacaatc 13479548  T
Q  195 tcttaacacacccaaggtcaatttggacacatc 227  Q
    ||||||||||| |||| |||| ||| |||||||    
T  13479547 tcttaacacactcaagctcaagttgcacacatc 13479515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 2696707 - 2696831
Alignment:
Q  91 ggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaaga 190  Q
    ||||||| ||||| ||| | ||||||||||||| |||||||||||| | |||||||||||||||| | ||||||||||| | | ||||| | || ||||     
T  2696707 ggatcttccatgtaagatacagtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagc 2696806  T
Q  191 aatctcttaacacacccaaggtcaa 215  Q
    |||| |||||||||||||| |||||    
T  2696807 aatcccttaacacacccaaagtcaa 2696831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 1940568 - 1940672
Alignment:
Q  105 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacaca 204  Q
    ||||| |||||||||||||||||| || |||||| |||||| ||||||||| ||||||||||||| ||||  ||  ||||||||  ||||||| ||||||    
T  1940568 agaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgaccaataacaatgcacaaagaatctctcaacaca 1940667  T
Q  205 cccaa 209  Q
    |||||    
T  1940668 cccaa 1940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 4157939 - 4158005
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaa 177  Q
    |||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||| |||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaa 4158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 2644338 - 2644413
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||||    
T  2644338 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 2659128 - 2659203
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||||    
T  2659128 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 3754652 - 3754573
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatc 194  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||  ||||||| | | ||||||| ||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatc 3754573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 4142108 - 4142187
Alignment:
Q  90 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 169  Q
    |||||||  ||||| || || |||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  4142108 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 3746060 - 3745966
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaa 209  Q
    |||||||||||||||||||||||  || ||||||||||||| | ||||| ||||| ||||||| | | ||||||| |||| ||||| ||||||||    
T  3746060 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 3745966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 956458 - 956333
Alignment:
Q  90 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaag 189  Q
    |||||||||||||| ||||| | |||||||||||  |||||||||||   |||||||||||||||| | |||||||||   |||| |||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaag 956359  T
Q  190 aaatctcttaacacacccaaggtcaa 215  Q
     |||| || || |||| |||| ||||    
T  956358 caatccctgaaaacactcaagttcaa 956333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 1931130 - 1931207
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 169  Q
    |||||||||||| ||||| |||||||||||||||||| || |||| | |||||| |||| |||| |||||||||||||    
T  1931130 gatcttgcatgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 968733 - 968629
Alignment:
Q  105 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacaca 204  Q
    ||||| |||||| ||||||||||| ||||||| | |||||| ||||||||| ||||||||||||| |||   ||| ||||||||  |||| || ||||||    
T  968733 agaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacaca 968634  T
Q  205 cccaa 209  Q
    |||||    
T  968633 cccaa 968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 1007522 - 1007454
Alignment:
Q  106 gaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattacca 174  Q
    |||| |||||||||||||||||| ||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 1022545 - 1022482
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattacca 174  Q
    |||||||||||||||||| ||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1022545 agtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 997623 - 997565
Alignment:
Q  120 tttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 178  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 1014013 - 1013955
Alignment:
Q  120 tttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 178  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 1013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 2442101 - 2442039
Alignment:
Q  105 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| | |||||||||    
T  2442101 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacat 166  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 1936964 - 1937073
Alignment:
Q  100 atgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctta 199  Q
    |||| ||||| |||||||||||||| ||| || |||| | ||  |||||||||||| ||||||||||||| |||| |||  ||||||||  |||| || |    
T  1936964 atgtgagaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctca 1937063  T
Q  200 acacacccaa 209  Q
    ||||||||||    
T  1937064 acacacccaa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 7432050 - 7432143
Alignment:
Q  112 gtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacac 205  Q
    ||||||||||||||||| || |||| | ||||||||||||||||   ||||||||||| ||||| ||  ||||||||| |||| ||||| ||||    
T  7432050 gtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatcccttaatacac 7432143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 2456300 - 2456249
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    |||||||||||||||| |||| | |||||||||||||||| |||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 2476709 - 2476634
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||| || |||| ||||||||||||||||||||| | ||||||| |  ||||| | |||||||||    
T  2476709 gatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || |||||||||| |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 9561961 - 9562036
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||| || | || | ||||||||||||||||||||| ||||||| || ||||| | |||||||||    
T  9561961 gatcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 2492157 - 2492083
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacat 166  Q
    ||||||||||||||| || | |  |||||||||||||||||||| || ||||||| |||||||| | ||||||||    
T  2492157 gatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacat 166  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 2678394 - 2678495
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaag 210  Q
    |||||||||||||||||| |||||||   |||||||||  ||||| ||||||||||||| |||| || | | ||||||| ||||  | || |||||||||    
T  2678394 agtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatccttcaaaacacccaag 2678493  T
Q  211 gt 212  Q
    ||    
T  2678494 gt 2678495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||||||| | |||||||||||||||| | |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 746383 - 746423
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatg 156  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcatg 746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 1891064 - 1891156
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacaccca 208  Q
    |||||||||||||||| |||| | |||||| ||||||||| | ||||||||||| |||| |||  | ||||||  |||| || ||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaacacaccca 1891156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 44001651 - 44001607
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcat 155  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||    
T  44001651 agtgtacagtttagtccaagactctttaattccatattccttcat 44001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    |||||||||||||||||||||||  |||||| |||||||| | |||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 771499 - 771550
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    |||||||||||||||| |||  | |||||||||||||||| |||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 7324407 - 7324482
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||| || | |  ||||||||||||||||||||| | |||| || |||||||| | |||||||||    
T  7324407 gatcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 9565805 - 9565880
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||| ||||||| || | || |||||||||||||||||||||||  ||| || |||||||| | |||||||||    
T  9565805 gatcttgtatgttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 2686307 - 2686411
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttc---atgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacaccc 207  Q
    ||||||||||||| ||||||||||||   ||||||||||||||   || ||||||||||||| |||| | || | ||||||  |||| || || ||||||    
T  2686307 agtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctcaaaacaccc 2686406  T
Q  208 aaggt 212  Q
    |||||    
T  2686407 aaggt 2686411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    |||||||||||||| |||  | |||||||||||||||| ||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 165  Q
    ||||||||||||||||| |||| | |||||||||||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 9594600 - 9594644
Alignment:
Q  92 gatcttgcatgttagaaagagtgaacaatttagtccaagactctt 136  Q
    ||||||||||||||| || |  |||||||||||||||||||||||    
T  9594600 gatcttgcatgttaggaacatggaacaatttagtccaagactctt 9594644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 23766857 - 23766924
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 178  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| | ||||||||||||||||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 23816705 - 23816772
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 178  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| | ||||||||||||||||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23816772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 23861021 - 23861089
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 179  Q
    |||||||||||||||||||||| |||  || |||||||||||||| | |||||||||||||| ||||||    
T  23861021 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaat 23861089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 11081890 - 11081811
Alignment:
Q  90 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 169  Q
    |||||||  ||||| || || ||| |||||||||||||||||||||| | ||||||| |||||||| |||||||||||||    
T  11081890 aggatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 23769641 - 23769702
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 172  Q
    |||||||||||||||||||||| ||| | | |||||||||||||| | ||||||||||||||    
T  23769641 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattac 23769702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 23819489 - 23819550
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 172  Q
    |||||||||||||||||||||| ||| | | |||||||||||||| | ||||||||||||||    
T  23819489 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattac 23819550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 23814088 - 23814156
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 179  Q
    |||||||||||||||||||||| ||   || |||||||||||||| | |||||||||||||| ||||||    
T  23814088 agtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcattactagaaat 23814156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    ||||||||||||||||||| |||| ||||||||||||| | |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 20305905 - 20305868
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcat 155  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20305905 aatttagtccaagactctttaattccatattccttcat 20305868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 20310309 - 20310272
Alignment:
Q  118 aatttagtccaagactcttgaattccatattccttcat 155  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20310309 aatttagtccaagactctttaattccatattccttcat 20310272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 23764255 - 23764316
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 172  Q
    |||||||||| ||||||||||| |||  || |||||||||||||| | ||||||||||||||    
T  23764255 agtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcattac 23764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 41973469 - 41973570
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag-aaattatgcacaagaaatctcttaacacacccaaggtc 213  Q
    |||| ||||||||| ||| ||| | || ||||||||||||| ||||||||||||| | ||| |||| ||||||||  || | | ||||||||||||||||    
T  41973469 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaaggtc 41973568  T
Q  214 aa 215  Q
    ||    
T  41973569 aa 41973570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  117 caatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 169  Q
    ||||||| |||||||||||| | |||||||||||||||| | |||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 23732223 - 23732155
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 179  Q
    |||||||| |||| |||||||| ||| | | |||||||||||||| | |||||||||||||| ||||||    
T  23732223 agtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcattactagaaat 23732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 25609350 - 25609420
Alignment:
Q  89 taggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacc 159  Q
    |||||||| ||| |||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||    
T  25609350 taggatctggcaagttagaaacaacgaacaatttagtccaagactcttgaatttcatattccttcatgacc 25609420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 51858658 - 51858605
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||| |||  | |||||||||||||||||| ||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 51381452 - 51381507
Alignment:
Q  113 tgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    |||||||||||||||||||||||| | |||||||||| ||||| | ||||| ||||    
T  51381452 tgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 51756749 - 51756802
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 51756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 51854999 - 51854946
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||| |||  | |||||||||| ||||||| ||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 51854946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 19727948 - 19727839
Alignment:
Q  100 atgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctta 199  Q
    |||| ||||| |||||||| ||||||||| ||||||| | || |||||||  |||| ||||||||||||| ||||||||  ||||||||  ||| ||  |    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatttcgca 19727849  T
Q  200 acacacccaa 209  Q
    ||||||||||    
T  19727848 acacacccaa 19727839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  116 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||| ||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 1442103 - 1442153
Alignment:
Q  111 agtgaacaatttagtccaagactcttgaattccatattccttcatgaccca 161  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| |||||    
T  1442103 agtgaacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 165  Q
    |||||||||||||||||||||| | |||||||||||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 165  Q
    |||||||||||||||||||||| | |||||||||||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 4183000 - 4183053
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 4743844 - 4743897
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 168  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 777 - 878
Alignment:
Q  115 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag-aaattatgcacaagaaatctcttaacacacccaaggtc 213  Q
    |||| ||||||||| ||| ||| | || ||||||||||||| ||||||||||||| | ||| |||| ||||||||  || | | ||||||||||||||||    
T  777 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaaggtc 876  T
Q  214 aa 215  Q
    ||    
T  877 aa 878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 1078157 - 1078211
Alignment:
Q  113 tgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 167  Q
    |||||||||||||||| ||||||  | ||||||| |||||||| |||||||||||    
T  1078157 tgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1756 times since January 2019
Visitors: 3673