View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0546_low_2 (Length: 590)
Name: NF0546_low_2
Description: NF0546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0546_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 383 - 582
Target Start/End: Complemental strand, 27080984 - 27080786
Alignment:
| Q |
383 |
ctatattatatcgaaataggtatagaatccgagtagaggaggttaaagagacttattagaggagtttgatggaccatgagaccaatattggaagaagcgc |
482 |
Q |
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| T |
27080984 |
ctatattatatcgaaataggtatagaatccgagtagaggaggttaaagagacttattagaggagtttgatggaccatgagaccaatattggaagaagcgc |
27080885 |
T |
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| Q |
483 |
atagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgccaattttgatgtagaagataatttatgcctttgat |
582 |
Q |
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| T |
27080884 |
atagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgccaattttgatgta-aagattttttatgcctttgat |
27080786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 383 - 582
Target Start/End: Original strand, 27148673 - 27148871
Alignment:
| Q |
383 |
ctatattatatcgaaataggtatagaatccgagtagaggaggttaaagagacttattagaggagtttgatggaccatgagaccaatattggaagaagcgc |
482 |
Q |
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| T |
27148673 |
ctatattatatcgaaataggtatagaatccgagtagaggaggttaaagagacttattagaggagtttgatggaccatgagaccaatattggaagaagcgc |
27148772 |
T |
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| Q |
483 |
atagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgccaattttgatgtagaagataatttatgcctttgat |
582 |
Q |
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| T |
27148773 |
atagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgccaattttgatgta-aagattttttatgcctttgat |
27148871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 27081188 - 27081051
Alignment:
| Q |
97 |
aggctcaacatattgtagaatgaactccattggtattgtggtgtgtgagtagaaagagaagaagggtagtgtttataaggatcgaataattgctttttat |
196 |
Q |
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| T |
27081188 |
aggctcaacatattgcagaatgaactccattggtattgtggtgtgtgagtaga----gaagaagggaagtgtttataaggatcaaataattgctttttat |
27081093 |
T |
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| Q |
197 |
taattagtattaaaattttgagattttctttccatttgaagg |
238 |
Q |
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| T |
27081092 |
taattagtattaaaattttgagattttctttccatttgaagg |
27081051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 97 - 291
Target Start/End: Original strand, 27148469 - 27148658
Alignment:
| Q |
97 |
aggctcaacatattgtagaatgaactccattggtattgtggtgtgtgagtagaaagagaagaagggtagtgtttataaggatcgaataattgctttttat |
196 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
27148469 |
aggctcaacatattgcagaatgaactccattggtattgtggtgtgtgagtaga----gaagaagggaagtgtttataaggatcaaataattgctttttat |
27148564 |
T |
|
| Q |
197 |
taattagtattaaaattttgagattttctttccatttgaaggnnnnnnnnnnnnacaaagctaaaggacaaaacgtaaaagaggaaagtataaat |
291 |
Q |
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| T |
27148565 |
taattagtattaaaattttgagattttctttccatttgaaggaatttttgttt-acaaagctaaaggacaaaaagtaaaaaaggaaagtaaaaat |
27148658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 27081039 - 27080999
Alignment:
| Q |
251 |
acaaagctaaaggacaaaacgtaaaagaggaaagtataaat |
291 |
Q |
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| T |
27081039 |
acaaagctaaaggacaaaaagtaaaaaaggaaagtaaaaat |
27080999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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