View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0546_low_4 (Length: 382)

Name: NF0546_low_4
Description: NF0546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0546_low_4
NF0546_low_4
[»] scaffold0446 (2 HSPs)
scaffold0446 (12-297)||(9889-10173)
scaffold0446 (319-382)||(10286-10349)
[»] chr4 (2 HSPs)
chr4 (12-297)||(56111025-56111309)
chr4 (319-382)||(56111422-56111485)
[»] chr6 (2 HSPs)
chr6 (12-170)||(26016792-26016950)
chr6 (88-170)||(26156241-26156323)
[»] chr8 (1 HSPs)
chr8 (255-297)||(1141771-1141813)


Alignment Details
Target: scaffold0446 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 9889 - 10173
Alignment:
Q  12 agctgttgctatcagtccacctaataacttacactcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttgagagcctagcaacaa 111  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  9889 agctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcctag-aacaa 9987  T
Q  112 ctcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcctgagagctaaaaaatcagcacatcatatcataccaaaaaact 211  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9988 ctcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactgtcctgagagctaaaaaatcagcacatcatatcataccaaaaaact 10087  T
Q  212 cccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaatcacttgtaaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10088 cccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaatcacttgtaaat 10173  T

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Target: scaffold0446; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 10286 - 10349
Alignment:
Q  319 attcctttatgaattagacgacaattgaatcttatctcacgttattaatgtcctatatatttct 382  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  10286 attcctttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttct 10349  T

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Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 56111025 - 56111309
Alignment:
Q  12 agctgttgctatcagtccacctaataacttacactcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttgagagcctagcaacaa 111  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  56111025 agctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcctag-aacaa 56111123  T
Q  112 ctcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcctgagagctaaaaaatcagcacatcatatcataccaaaaaact 211  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  56111124 ctcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactatcctgagagctaaaaaatcagcacatcatatcataccaaaaaact 56111223  T
Q  212 cccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaatcacttgtaaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56111224 cccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaatcacttgtaaat 56111309  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 56111422 - 56111485
Alignment:
Q  319 attcctttatgaattagacgacaattgaatcttatctcacgttattaatgtcctatatatttct 382  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  56111422 attcctttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttct 56111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 26016792 - 26016950
Alignment:
Q  12 agctgttgctatcagtccacctaataacttacactcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttgagagcctagcaacaa 111  Q
    ||||||||||||||||||| ||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26016792 agctgttgctatcagtccatctaataactcaaactcctctagtaacatctccacaaacttaagataaaattcaatcacaaacttgagagcctagcaacaa 26016891  T
Q  112 ctcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26016892 ctcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 26016950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 26156241 - 26156323
Alignment:
Q  88 acaaacttgagagcctagcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26156241 acaaacttgagagcctagcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 26156323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 1141771 - 1141813
Alignment:
Q  255 aaatatcctaattccaaagatagaatgtaaatcacttgtaaat 297  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  1141771 aaatatcctaattccaaatatagaatgtaaatcacttgtaaat 1141813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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