View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0546_low_5 (Length: 329)
Name: NF0546_low_5
Description: NF0546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0546_low_5 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0634 (1 HSPs) |
| | |
|
| [»] scaffold0032 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0021 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 120107 - 119888
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
120107 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaactaa |
120008 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120007 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
119908 |
T |
|
| Q |
256 |
aaagagaggtctagggtcac |
275 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
119907 |
aaagagaggtctagggtcac |
119888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 10890599 - 10890380
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10890599 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaactaa |
10890500 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10890499 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
10890400 |
T |
|
| Q |
256 |
aaagagaggtctagggtcac |
275 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10890399 |
aaagagaggtctagggtcac |
10890380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 63 - 275
Target Start/End: Complemental strand, 27612089 - 27611873
Alignment:
| Q |
63 |
ctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagat |
162 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27612089 |
ctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagat |
27611990 |
T |
|
| Q |
163 |
taatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt-aatcaataaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| ||| ||||||||||| || |||||||| |||||||| | |
|
|
| T |
27611989 |
taatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaacgacgaagaaggataaaagtgcgaagatgtaaatcaataga |
27611890 |
T |
|
| Q |
259 |
gagaggtctagggtcac |
275 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27611889 |
gagaggtctagggtcac |
27611873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 273
Target Start/End: Original strand, 22405819 - 22406043
Alignment:
| Q |
53 |
agctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaac |
152 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
22405819 |
agctgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattaattaacaagtaataaac |
22405918 |
T |
|
| Q |
153 |
taattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt- |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||| | |||| |||| ||| ||||||||||| || |||||||| |
|
|
| T |
22405919 |
taattaagattaatttattatttagacgaacaaggagtagaatagtttcggtaaccaggtaaaacgtaacgacgaagaaggataaaagtgcgaagatgta |
22406018 |
T |
|
| Q |
249 |
aatcaataaagagaggtctagggtc |
273 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
22406019 |
aatcaatagagagaggtctagggtc |
22406043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 23164407 - 23164628
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
23164407 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
23164506 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagt---aatgacgaaggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||| || || ||||||||||| || |||||||| ||| |
|
|
| T |
23164507 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaaccaagtgaaaagtaacaacgaagaaggataaaagtgcgaagatgtaaat |
23164606 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
||||| | |||||| ||||||| |
|
|
| T |
23164607 |
caatagaaagaggtatagggtc |
23164628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 23575664 - 23575885
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
23575664 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
23575763 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagt---aatgacgaaggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||| || || ||||||||||| || |||||||| ||| |
|
|
| T |
23575764 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaaccaagtgaaaagtaacaacgaagaaggataaaagtgcgaagatgtaaat |
23575863 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
||||| | |||||| ||||||| |
|
|
| T |
23575864 |
caatagaaagaggtatagggtc |
23575885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 11010096 - 11009942
Alignment:
| Q |
123 |
tccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat |
222 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
11010096 |
tccatagggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaac |
11009997 |
T |
|
| Q |
223 |
gac---gaaggataaaaatgtgaagatgt-aatcaataaagagaggtctagggtc |
273 |
Q |
| |
|
||| ||||||| ||| || |||||||| |||||||| |||||||||||||||| |
|
|
| T |
11009996 |
gacgaagaaggatgaaagtgcgaagatgtaaatcaatagagagaggtctagggtc |
11009942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 11767161 - 11767337
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||| ||||||| || || ||||| |||||||||||| |||| | |||||||| ||||| | ||||||| |
|
|
| T |
11767161 |
tgttgcactaaaaatacacttagagcaagtgtgctctatcacaagagaagtatgaaagattatcgtgtcca-aaaaattaattaacaagttccaaactaa |
11767259 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataa |
234 |
Q |
| |
|
|||| ||| ||||||| |||||| ||| || || | ||||| || ||||||||| | |||||||||| |||| |||| |
|
|
| T |
11767260 |
ttaatatt-atttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataa |
11767337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 11544096 - 11543877
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
11544096 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtatcaaactaa |
11543997 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543996 |
ttaagattaatttattatttagacgaacaaataatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgtaatcaat |
11543897 |
T |
|
| Q |
256 |
aaagagaggtctagggtcac |
275 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11543896 |
aaagagaggtctagggtcac |
11543877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 21431772 - 21431992
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
21431772 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtaccaaactaa |
21431871 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgtaatc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
21431872 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgtaatc |
21431971 |
T |
|
| Q |
253 |
aataaagagaggtctagggtc |
273 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21431972 |
aataaagagaggtctagggtc |
21431992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 272
Target Start/End: Original strand, 16139041 - 16139261
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
16139041 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtattataaaagattatcgtatccgcagagattaattaacaagtaccaaactac |
16139140 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaa-tgtgaagatgt-aa |
250 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || | ||||||||||| ||||||| | ||||||| ||| |||||||||||| || |||||||| || |
|
|
| T |
16139141 |
ttaagatt-atttattatttagatgaacaactagttcaatggtttcggcaactaaatagaaagtaacgacgaagaaggataaaaagtgcgaagatgtaaa |
16139239 |
T |
|
| Q |
251 |
tcaataaagagaggtctagggt |
272 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
16139240 |
tcaatagagagaggtctagggt |
16139261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 10127848 - 10127630
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | | |||||||||| || ||||| |||||||| |||||||||| ||||| |||||| |
|
|
| T |
10127848 |
tgttgcgctaaaaatatacttagagcaagtgtactctattgtaaaagtagtatacaaaattataatatccacaaggattaattaaatagtaccaaactag |
10127749 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt-aatcaa |
254 |
Q |
| |
|
|||||||| ||||||||||||||| || || || | ||||||||| ||||| ||| | ||||||| || ||||||||||| | |||||||| |||||| |
|
|
| T |
10127748 |
ttaagatt-atttattatttagacaaataactagttgaatggtttttgtaacgaaatagaaagtaa-gaagaaggataaaagtacgaagatgtaaatcaa |
10127651 |
T |
|
| Q |
255 |
taaagagaggtctagggtcac |
275 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
10127650 |
tagagagaggtctagagtcac |
10127630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 7576 - 7797
Alignment:
| Q |
55 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
154 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
7576 |
ctgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaaaaagtaccaaacta |
7675 |
T |
|
| Q |
155 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgtaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7676 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgtaat |
7775 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7776 |
caataaagagaggtctagggtc |
7797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 14276543 - 14276764
Alignment:
| Q |
55 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
154 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
14276543 |
ctgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccccagggattaattaacaagtaccaaacta |
14276642 |
T |
|
| Q |
155 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgtaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
14276643 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatgcgaaaatgtaat |
14276742 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14276743 |
caataaagagaggtctagggtc |
14276764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 37470195 - 37470415
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37470195 |
tgttgcgctaaaaacacacttagagcaagtgtactcaatcgcataagtagtataaaagattatcgtatccacatggattaattaacaagtactaaactaa |
37470294 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| |||||| |||||| |||| |||||| || |||||||| ||| |
|
|
| T |
37470295 |
ttaagattactttattatttagacgaacaagtagtagaat-gttttggtaactaagtaaaaagaaatgacgaagaagcataaaagtgcgaagatgtaaat |
37470393 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
37470394 |
caatggagagaggtctagggtc |
37470415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 11623752 - 11623631
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11623752 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcacagaagtagtataaaagattatcgtatccacagagattaattaataagtactaaactaa |
11623653 |
T |
|
| Q |
156 |
ttaaga-ttaatttattattta |
176 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
11623652 |
ttaagatttaatttattattta |
11623631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 113 - 275
Target Start/End: Complemental strand, 45279872 - 45279713
Alignment:
| Q |
113 |
gattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
45279872 |
gattatcgtatccacagggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagt |
45279773 |
T |
|
| Q |
213 |
aaaaagtaatgacgaaggataaaaatgtgaagatgt-aatcaataaagagaggtctagggtcac |
275 |
Q |
| |
|
|| | || ||||||||||| || |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45279772 |
aa----cgacgaagaaggataaaagtgcgaagatgtaaatcaatagagagaggtctagggtcac |
45279713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 1686354 - 1686199
Alignment:
| Q |
66 |
aaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaa |
165 |
Q |
| |
|
|||||| || |||||||||| |||| |||| ||||||||| |||||||||||| ||| |||| ||| |||||| |||||| ||||||||||| ||| |
|
|
| T |
1686354 |
aaaacacacatagagcaagtatactatatcacagaagtagaataaaagattattttattcacaaggaataattaacaagtatacaactaattaaggtta- |
1686256 |
T |
|
| Q |
166 |
tttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat |
222 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||| ||||||| |||||||||| |
|
|
| T |
1686255 |
tttattatttagacgaacaagtagttgaatggcttcggaaactaaataaaaagtaat |
1686199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 45279911 - 45279878
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtac |
89 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
45279911 |
tgttgcgctaaaaacacacttagagcaagtgtac |
45279878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 3727 - 3948
Alignment:
| Q |
55 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
154 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
3727 |
ctgttgcgctaaaaacacacttatagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaatttacaagtaccaaacta |
3826 |
T |
|
| Q |
155 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgtaat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
3827 |
attaagattaatttattatttagacgaacaagtaatagaatggttttagtaaccaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgtaat |
3926 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3927 |
caataaagagaggtctagggtc |
3948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 31962763 - 31962540
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31962763 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
31962664 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| ||| ||||||||||| || |||||||| ||| |
|
|
| T |
31962663 |
ttaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaacgacgaagaaggataaaagtgcgaagatgtaaat |
31962564 |
T |
|
| Q |
252 |
caataaagagaggtctagggtcac |
275 |
Q |
| |
|
||||| |||||| ||||||||||| |
|
|
| T |
31962563 |
caatagagagagttctagggtcac |
31962540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 10889318 - 10889462
Alignment:
| Q |
78 |
gagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttag |
177 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||| |||| ||| ||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10889318 |
gagcaagggtactctatcgtagaagtag-----aagattatcatatcaacaaggattcattaacaagtactaaactaattaagatta-tttattatttag |
10889411 |
T |
|
| Q |
178 |
acgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaa |
228 |
Q |
| |
|
||| ||||||| ||||||| |||| |||||| || |||||||||||||||| |
|
|
| T |
10889412 |
acggacaagtattagaatgatttcagtaactgaataaaaagtaatgacgaa |
10889462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 23616730 - 23616615
Alignment:
| Q |
161 |
attaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt-aatcaata |
256 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||| |||| || ||||||||| ||| ||||||||| | ||||||||||| |||||| | |
|
|
| T |
23616730 |
attaatttattatttagacgaccaagtagtagaatagtttcgataaccaagtaaaaagtaacgacgaagaaggataagagtgtgaagatgtaaatcaaca |
23616631 |
T |
|
| Q |
257 |
aagagaggtctagggt |
272 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
23616630 |
gagagaggtatagggt |
23616615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 23616794 - 23616749
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaa |
101 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23616794 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaa |
23616749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 22799086 - 22799175
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagt |
145 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| || ||||||| |||| |||||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
22799086 |
tgttgtgctaaaaactcacttagatcaagtgccctttatcgcataagtggtataaaagattattgcatccacaaaggttaattagcaagt |
22799175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 4114 - 3893
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
4114 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
4015 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagt---aatgacgaaggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||| || || ||||||||||| || |||||||| ||| |
|
|
| T |
4014 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaaccaagtgaaaagtaacaacgaagaaggataaaagtgcgaagatgtaaat |
3915 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
||||| | |||||| ||||||| |
|
|
| T |
3914 |
caatagaaagaggtatagggtc |
3893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 22380 - 22228
Alignment:
| Q |
62 |
gctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaaga |
161 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22380 |
gctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaactaattaaga |
22281 |
T |
|
| Q |
162 |
ttaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaa |
215 |
Q |
| |
|
|| |||||||||||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
22280 |
tt-atttattatttagacgaacaagtagatgagtggtttcggtcactaaagaaa |
22228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 29275 - 29178
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaact |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29275 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaact |
29178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 13812689 - 13812867
Alignment:
| Q |
101 |
agtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13812689 |
agtagtataaaagattatcgtatccacagaggttaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagttt |
13812788 |
T |
|
| Q |
201 |
cggtaactaaagaaaaagtaatgac---gaaggataaaaatgtgaagatgt-aatcaataaagagaggtctagggtcac |
275 |
Q |
| |
|
||||||| || ||||||||| ||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
13812789 |
cggtaaccaagtaaaaagtaacgacgaagaaggataaaactgtgaagatgtaaatcagtagagagaggtctagggtcac |
13812867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 17342863 - 17342728
Alignment:
| Q |
79 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttaga |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17342863 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtactaaactaattaagatt-atttattatttaga |
17342765 |
T |
|
| Q |
179 |
cgaacaagtaatagaatggtttcggtaactaaagaaa |
215 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||| |
|
|
| T |
17342764 |
cgaacaagtagatgagtggttttggtaactaaagaaa |
17342728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 7727832 - 7727938
Alignment:
| Q |
171 |
tatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacg---aaggataaaaatgtgaagatgtaa-tcaataaagagaggtc |
266 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||| | ||||| |||||| | ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
7727832 |
tatttagacgattaagtaattgagtggtttcggtaactagataaaaaataatgaggaacaaggataaaaacacgaagatgtaactcaatagagagaggtc |
7727931 |
T |
|
| Q |
267 |
tagggtc |
273 |
Q |
| |
|
||||||| |
|
|
| T |
7727932 |
tagggtc |
7727938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 26116109 - 26115902
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
26116109 |
tgttgcgctaaaaacacacctaaagcaagtgtactctatcgcataagtagtataaaagattattgtatcaaca--------------agtactaaactaa |
26116024 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaa---ggataaaaatgtgaagatgt-aat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||| |||||||| |||| ||| || |||||||| ||| |
|
|
| T |
26116023 |
ttaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtgatgacgaagatggatgaaagtgagaagatgtaaat |
26115924 |
T |
|
| Q |
252 |
caataaagagaggtctagggtc |
273 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26115923 |
caataaagagaggtctagggtc |
26115902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 7705912 - 7705869
Alignment:
| Q |
74 |
cttagagcaagtgtactctatcgcagaagtagtataaaagatta |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7705912 |
cttagagcaagtgtactctattgcagaagtagtataaaagatta |
7705869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 48179972 - 48180155
Alignment:
| Q |
56 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
155 |
Q |
| |
|
|||||| | ||||| | ||||| || |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
48179972 |
tgttgcccaaaaaagaaacttacagtaagtgtactctatcataaaagtagtataaaagattatcgtatccacattgattaattaacaaatatcaaactaa |
48180071 |
T |
|
| Q |
156 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaat |
238 |
Q |
| |
|
|||||||| |||||||||| | ||||||||| | ||||||| ||||| ||||| || |||||||||||| ||||||||||||| |
|
|
| T |
48180072 |
ttaagatt-atttattattcaaacgaacaagcattagaatgatttcgataact-gagtaaaagtaatgacaaagaaggataaaaat |
48180155 |
T |
|
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