View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_100 (Length: 252)
Name: NF0547_high_100
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_100 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 25378101 - 25378241
Alignment:
| Q |
101 |
accatgcatacacatctacaatcatacctaataagataaataagcaaaaacataggtcaattctaacttaactaaagtttaacaaccatttcggtctcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378101 |
accatgcatacacatctacaatcatacctaataagataaataagcaaaaacataggttaattctaacttaactaaagtttaacaaccatttcggtctcac |
25378200 |
T |
|
| Q |
201 |
aaaatctgagaaagttgtacgtaaaagatttagctgttcat |
241 |
Q |
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|||||| |||||| || |||||||||||||||| ||||||| |
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| T |
25378201 |
aaaatccgagaaaattatacgtaaaagatttagttgttcat |
25378241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25377989 - 25378069
Alignment:
| Q |
1 |
aaaaagatgtaacggaaaaagaaataaagaaaatttaatcacattaaatagcaacaatgcaatagctcagcactaaataac |
81 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25377989 |
aaaaagatgtaacggaaaaggaaataaagaaaatttaatcacattaaatagcaacaatgcaatagcttagcactaaataac |
25378069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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