View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_115 (Length: 251)
Name: NF0547_high_115
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_115 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2710981 - 2710744
Alignment:
| Q |
1 |
catttttcattgtaccctcataaatttcaagtagcaccaatgaagctcatgatttgtgggatgatgaaattcactgcaacaaaaacacaaagtagaccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
2710981 |
catttttcattgtaccctcataaatttcaagtagcaccaatgaagctcatgatttgtgggatgatgaaattcactgcaacaaaaatacaaagtaaaccaa |
2710882 |
T |
|
| Q |
101 |
tttttctgtgaatactaaggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttataactaataattgatagtttatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2710881 |
tttttctgtgaatactaaggctctgattagtaaaattaagttataagttagttgatagttgaaaagctagtttataactaataattgatagtttatattt |
2710782 |
T |
|
| Q |
201 |
gaaaagctagacgtttgaaattcaagtgtttgcggttc |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
2710781 |
gaaaagctagaccgttgaaattcaagtgtttgcggttc |
2710744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 29050541 - 29050587
Alignment:
| Q |
130 |
gtaaaattaagttataacttagatgatagttgaaaagctagtttata |
176 |
Q |
| |
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|||||| |||||||||| ||||||||||| ||||||||||| ||||| |
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|
| T |
29050541 |
gtaaaaataagttataagttagatgatagctgaaaagctagcttata |
29050587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 22708210 - 22708112
Alignment:
| Q |
112 |
atactaaggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttataactaataattgatagtttatatttgaaaagctag |
210 |
Q |
| |
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|||||||||||||| || |||||| |||| ||||| ||| |||||| ||||||||||| | || ||| ||| |||||| ||||| ||||||||||| |
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| T |
22708210 |
atactaaggctctgtttggtaaaaataagctataagctagctgatagctgaaaagctagctgatgactgatagctgatagcttatagctgaaaagctag |
22708112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 40675524 - 40675466
Alignment:
| Q |
118 |
aggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttata |
176 |
Q |
| |
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|||||||| ||||||||| ||||||||| |||| ||||||||||||| |||| ||||| |
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| T |
40675524 |
aggctctgtttagtaaaaaaaagttataagttagctgatagttgaaaaactagcttata |
40675466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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