View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_high_122 (Length: 228)

Name: NF0547_high_122
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_high_122
NF0547_high_122
[»] chr3 (5 HSPs)
chr3 (24-99)||(24634461-24634536)
chr3 (24-98)||(24680132-24680206)
chr3 (90-123)||(24704126-24704159)
chr3 (36-99)||(24656577-24656640)
chr3 (138-166)||(24704181-24704209)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 24634461 - 24634536
Alignment:
Q  24 ttgatacataattccaattgaacccaactgcaaactcataagaatcatatatgttttatggatactcattttgtgt 99  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||  |||||| ||||||||||||||||||||||    
T  24634461 ttgatacataattccaattgaacccaactccaaactcatcagaatagtatatgctttatggatactcattttgtgt 24634536  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 24680132 - 24680206
Alignment:
Q  24 ttgatacataattccaattgaacccaactgcaaactcataagaatcatatatgttttatggatactcattttgtg 98  Q
    ||||||||||||||||||||| | ||||| ||| ||||| |||||  |||||| ||||| || ||||||||||||    
T  24680132 ttgatacataattccaattgagctcaactccaagctcatgagaatagtatatgctttatagaaactcattttgtg 24680206  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 24704126 - 24704159
Alignment:
Q  90 cattttgtgttgtttgtgctgatcgggggaagat 123  Q
    ||||||||||||||||||||||||||||||||||    
T  24704126 cattttgtgttgtttgtgctgatcgggggaagat 24704159  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 24656577 - 24656640
Alignment:
Q  36 tccaattgaacccaactgcaaactcataagaatcatatatgttttatggatactcattttgtgt 99  Q
    |||||||||||||||||  ||  ||||||||||  |||||| |||||| |||||||||||||||    
T  24656577 tccaattgaacccaactctaaggtcataagaatagtatatgctttatgcatactcattttgtgt 24656640  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 24704181 - 24704209
Alignment:
Q  138 caagggagtttagggggattcaaatatac 166  Q
    |||||||||||||||||||||||||||||    
T  24704181 caagggagtttagggggattcaaatatac 24704209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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