View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_123 (Length: 228)
Name: NF0547_high_123
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_123 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 39735076 - 39735297
Alignment:
| Q |
7 |
ccaatcccaaggtcgcaaaagctagagcattaaacctctgtgattacattcaattcttcacgtatatgttttcactcaattttaagcaatacagaggcta |
106 |
Q |
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| T |
39735076 |
ccaatcccaaggtcgcaaaagctagagcattaaacctctgtgattacattcaattcttcacgtatatgttttcactcaattttaagcaatacagaggcca |
39735175 |
T |
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| Q |
107 |
tgaagcaaatcccaaatacatttgatcttaagtacacttttggtcattggtgggacaaaatctgcatttgtatttgctttagcatgttttggatgaatgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39735176 |
tgaagcaaatcccaaatacatttgatcttaagtacacttttggtcattggtgggacaaaatctgcatttgtatttgctttagcatgttttggatgaatgc |
39735275 |
T |
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| Q |
207 |
tttcatattctgtatccaagca |
228 |
Q |
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| T |
39735276 |
tttcatattctgtctgcaagca |
39735297 |
T |
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