View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_25 (Length: 456)
Name: NF0547_high_25
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 195 - 348
Target Start/End: Original strand, 41864690 - 41864843
Alignment:
| Q |
195 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggctccaagcttgtgtttcttcgtaaacaaattattcaaacccact |
294 |
Q |
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| T |
41864690 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggttccaagcttgtgtttcttcgtaaacaaattattcagcccctct |
41864789 |
T |
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| Q |
295 |
cttttttgtgctccttagccccgccattcaacttcatttgattccactttatgc |
348 |
Q |
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| T |
41864790 |
cttttttgtgctccttagccccgccattcaacttcatttgtttccactttatgc |
41864843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 41864482 - 41864624
Alignment:
| Q |
14 |
aggggaagaagaattatcacaaaagctacaataaactaatgtaaaacatgtaaggagaaaattcttgagaaaacaaaacaaaccgatgcaaagagaaagc |
113 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
41864482 |
aggggaagaagaattatcacaaaagctacaatgaactaatgtaaaacatgtaaggagaaaattcttgagaaaacaaaacaaaccgatacaaacagaaagc |
41864581 |
T |
|
| Q |
114 |
acacagatatgaagagttaacattcatacgaagggttctttat |
156 |
Q |
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| T |
41864582 |
acacagatatgaagagttaacattcatacgaagggttctttat |
41864624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 26451987 - 26451950
Alignment:
| Q |
311 |
agccccgccattcaacttcatttgattccactttatgc |
348 |
Q |
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| T |
26451987 |
agccccgccattcaacttcatttgattccactttatgc |
26451950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 13861358 - 13861395
Alignment:
| Q |
311 |
agccccgccattcaacttcatttgattccactttatgc |
348 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
13861358 |
agccccaccattcaacttcatttggttccactttatgc |
13861395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 52526654 - 52526691
Alignment:
| Q |
311 |
agccccgccattcaacttcatttgattccactttatgc |
348 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
52526654 |
agccccaccattcaacttcatttggttccactttatgc |
52526691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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