View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_26 (Length: 451)
Name: NF0547_high_26
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 24087746 - 24087971
Alignment:
| Q |
30 |
attaccgtatgaaaataataagaaagaaatatcaacacatgatgaatccaacataccgtaacatttttattgagacaaaaataagttactannnnnnnnn |
129 |
Q |
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| T |
24087746 |
attaccgtatgaaaataataagaaagaaatatcaacacatgatgaatccaacataccgtaacatttttattgagacaaaaataagttacta-tttttttt |
24087844 |
T |
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| Q |
130 |
nacgaaaaaataagtgagttaatgtatacaacttacaagatacaaaatcattacgtcnnnnnnntatacaaaactattttttctggtagtgacaaaacta |
229 |
Q |
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| T |
24087845 |
tacgaaaaaataagtgagttaatgtatacaacttacaagatacaaaatcattacgtcaaaaatatatataaaactattttttctggtagtgacaaaacta |
24087944 |
T |
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| Q |
230 |
ttgtaaca-tggattcaacgcaaacgt |
255 |
Q |
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|||||| | |||||||||||||||||| |
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| T |
24087945 |
ttgtaatagtggattcaacgcaaacgt |
24087971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 24087971 - 24088000
Alignment:
| Q |
271 |
tcataaattacatgtttttattaaaggata |
300 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24087971 |
tcataaattacatgtttttattaaaggata |
24088000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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