View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_high_27 (Length: 446)
Name: NF0547_high_27
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Original strand, 37154817 - 37155227
Alignment:
| Q |
7 |
ggagcagagagaatcgcaaaatatgttggggctatttggtcttcattaaaagacaccataaatacctatttaatggagccaaatttctcttttactctag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37154817 |
ggagcagagagaatcgcaaaatatgttggggctatttggtcttcattaaaagacaccataaatacctatttaatggagccaaatttctcttttactctag |
37154916 |
T |
|
| Q |
107 |
cacccacagatggtattgactttccaaagaatgaagttgtaattgaagctctgtccctccttcagcagcttattgtgcaaaatagtagtcagttagttag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37154917 |
cacccacagatggtattgactttccaaagaatgaagttgtaattgaagctctgtccctccttcagcagcttattgtgcaaaatagtagtcagttagttag |
37155016 |
T |
|
| Q |
207 |
cttgataattgatgacaaggatgtcaactttattatcaacagcattgcatcttatgagatgtacgacgctatttctgtgcaagaaaagaagaaactacat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37155017 |
cttgataattgatgacaaggatgtcaactttattatcaacagcattgcatcttatgagatgtacgacgctgtttctgtgcaagaaaagaagaaactacat |
37155116 |
T |
|
| Q |
307 |
gttattggtcgcattctctatatttttgccaagacttccattccttcctgcaatgccgtgtttcaaagtcttttactaagaatgatggatagtttgggat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37155117 |
gttattggtcgcattctctatatttttgccaagacttccattccttcctgcaatgccgtgtttcaaagtcttttactaagaatgatggatagtttgggat |
37155216 |
T |
|
| Q |
407 |
tttctgttagt |
417 |
Q |
| |
|
||||||||||| |
|
|
| T |
37155217 |
tttctgttagt |
37155227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 417
Target Start/End: Complemental strand, 25223180 - 25223003
Alignment:
| Q |
224 |
aggatgtcaactttattatcaacagcattgcatcttatgagatgtacgacgctatttctgtgcaagaaaagaagaaactacatgttattggtcgcattct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25223180 |
aggatgtcaactttattatcaacagcattgcgtcttatgagatgtataacactatttatgtcgaagaaaagaagaaactacatgatattggtcgcattct |
25223081 |
T |
|
| Q |
324 |
ctatatttttgccaagacttccattccttcctgcaatgccgtgtttcaaagtcttttactaagaatgatggatagtttgggattttctgttagt |
417 |
Q |
| |
|
||| || || ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25223080 |
cta----------------tcaatgccttcctgcaatgccttgtttcaaaaccttttactaagcatgatggatagtttgagattttctgttagt |
25223003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 417
Target Start/End: Complemental strand, 25287336 - 25287159
Alignment:
| Q |
224 |
aggatgtcaactttattatcaacagcattgcatcttatgagatgtacgacgctatttctgtgcaagaaaagaagaaactacatgttattggtcgcattct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25287336 |
aggatgtcaactttattatcaacagcattgcgtcttatgagatgtataacactatttatgtcgaagaaaagaagaaactacatgatattggtcgcattct |
25287237 |
T |
|
| Q |
324 |
ctatatttttgccaagacttccattccttcctgcaatgccgtgtttcaaagtcttttactaagaatgatggatagtttgggattttctgttagt |
417 |
Q |
| |
|
||| || || ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25287236 |
cta----------------tcaatgccttcctgcaatgccttgtttcaaaaccttttactaagcatgatggatagtttgagattttctgttagt |
25287159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 22830907 - 22830841
Alignment:
| Q |
11 |
cagagagaatcgcaaaatatgttggggctatttggtcttcattaaaagacaccataaatacctattt |
77 |
Q |
| |
|
|||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22830907 |
cagagaaaatcgcaaaatataccgacgctattttgtcttcattaaaagacaccataaatacctattt |
22830841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 43386738 - 43387143
Alignment:
| Q |
7 |
ggagcagagagaatcgcaaaatatgttggggctatttggtcttcattaaaagacaccataaatacctatttaatggagccaaatttctcttttactctag |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
43386738 |
ggagcagagagaatcgcaaaatatactggggctatttggtcttcattaaaagacactttatatacttatttgggggagccagatttctcttttactctag |
43386837 |
T |
|
| Q |
107 |
cacccacagatggtattgactttccaaagaatgaagttgtaattgaagctctgtccctccttcagcagcttattgtgcaaaatagtagtcagttagttag |
206 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43386838 |
cacccacagatggtatcaattttccaaagagcgaagttgtagttgaagctctctccctccttcagcagcttattgtgcaaaatagtagtcagttagttag |
43386937 |
T |
|
| Q |
207 |
cttgataattgatgacaaggatgtcaactttattatcaacagcattgcatcttatgagatgtacgacgctatttctgtgcaagaaaagaagaaactacat |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43386938 |
cttgataattgatgatgaggatgtcaacttcattaccaacagcattgcatcttatgagatgtacgacactatttctgtgcaagaaaagaagaaactacat |
43387037 |
T |
|
| Q |
307 |
gttattggtcgcattctctatatttttgccaagacttccattccttcctgcaatgccgtgtttcaaagtcttttactaagaatgatggatagtttgggat |
406 |
Q |
| |
|
| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
43387038 |
gctattggtcgcattttatatatttctgccaagacttccattccttcctgcaatgctgtgtttcaaagtcttttcttaagaatgatggataaattgggat |
43387137 |
T |
|
| Q |
407 |
tttctg |
412 |
Q |
| |
|
|||||| |
|
|
| T |
43387138 |
tttctg |
43387143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1311 times since January 2019
Visitors: 3667