View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_33 (Length: 426)
Name: NF0547_high_33
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 59 - 409
Target Start/End: Complemental strand, 40552093 - 40551743
Alignment:
| Q |
59 |
agtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcctatttatcttttcctagggcaatttttaaactaa |
158 |
Q |
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| T |
40552093 |
agtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcttatttatcttttcctagggcaatttttaaactaa |
40551994 |
T |
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| Q |
159 |
attatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgg |
258 |
Q |
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| T |
40551993 |
attatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttctgtggtattattgttttcagttgtttagatcactctaacattgg |
40551894 |
T |
|
| Q |
259 |
gatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcataca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40551893 |
gatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatatctttgtttatgtattctatttattagcaggcataca |
40551794 |
T |
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| Q |
359 |
aatcactaaatatggatagcttgtagcactgagttttctatttcgagtatt |
409 |
Q |
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| T |
40551793 |
aatcactaaatatggatagcttgtagcaccgagttttctatttcgagtatt |
40551743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 40569173 - 40569110
Alignment:
| Q |
148 |
ttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagtt |
213 |
Q |
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| T |
40569173 |
ttttaaactaaattata--tatgcagtttttgaaaaattagtcatataccgactgtttcagtagtt |
40569110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 402
Target Start/End: Complemental strand, 40569059 - 40568971
Alignment:
| Q |
313 |
gcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttc |
402 |
Q |
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||||||||||||| ||||| |||||||| | |||||||||||| |||||||| | ||||| |||| ||||||||||||||| |||| |
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| T |
40569059 |
gcattcatgtctt-gtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgcagcactgagttttctgtttc |
40568971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 399
Target Start/End: Complemental strand, 15110539 - 15110325
Alignment:
| Q |
185 |
ttaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatactta |
284 |
Q |
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| T |
15110539 |
ttaattatatacggattgttttaatagttttgtggtattattgtttttggttgttcggattactctaaaattgggatagggtgacaaatttacgtactta |
15110440 |
T |
|
| Q |
285 |
aatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtag |
384 |
Q |
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|| ||||||||||||| || |||||| |||||| || | |||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||| |
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| T |
15110439 |
catttgtactcttatgcgtgaatatttcatattcatctcgtcgtttatgtattctattcaatagcagccatacaaatcactaaatatggatggcttgtag |
15110340 |
T |
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| Q |
385 |
cactgagttttctat |
399 |
Q |
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||| ||||| ||||| |
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| T |
15110339 |
caccgagttgtctat |
15110325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 15109895 - 15110018
Alignment:
| Q |
219 |
gtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattc |
318 |
Q |
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||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| | | ||| |||||| ||||| |
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| T |
15109895 |
gtattcttgtttttggttgtttggattactctaacattgggatagggtgacaaatttacgtacttaaatttgtactctaacgagtggatatttcacattc |
15109994 |
T |
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| Q |
319 |
atgtctttgtttatgtattctatt |
342 |
Q |
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|| |||| |||||||||||||||| |
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| T |
15109995 |
atctcttcgtttatgtattctatt |
15110018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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