View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_high_38 (Length: 411)

Name: NF0547_high_38
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_high_38
NF0547_high_38
[»] chr1 (12 HSPs)
chr1 (40-184)||(27994536-27994681)
chr1 (308-401)||(27994803-27994895)
chr1 (42-184)||(28004271-28004420)
chr1 (317-396)||(28004562-28004641)
chr1 (312-401)||(27995443-27995532)
chr1 (317-398)||(28004896-28004977)
chr1 (316-401)||(27995112-27995196)
chr1 (122-183)||(27995245-27995306)
chr1 (139-177)||(28005040-28005078)
chr1 (140-177)||(28005349-28005386)
chr1 (138-180)||(28004711-28004753)
chr1 (316-348)||(28005219-28005251)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 27994536 - 27994681
Alignment:
Q  40 tgaaatggtttcttcattcatttctactgatgggattaggaatcagatgttgtttagtgttttttc-tgcttaggctatgtagatttcaaataccaaagt 138  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27994536 tgaaatggtttcttcattcgtttctactgatgggactaggaatcagatgttgtttagtgttttttcatgcttaggctatgtagatttcaaataccaaagt 27994635  T
Q  139 agtgaatacttatcgtaaaaatatacaacaatatatagcctgtctg 184  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  27994636 agtgaatacttatcgtaaaaatatacaacaatatatagtctgtctg 27994681  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 27994803 - 27994895
Alignment:
Q  308 attacacctatcaattaaattcattataattttcttctttcaaaccataatttgataaatttactgttactaatggtttcttcgttcgtctctg 401  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27994803 attacacctatcaattaaattcattataattttcttctttcagaccataatttgataaatttactgttactaatgg-ttcttcgttcgtctctg 27994895  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 28004271 - 28004420
Alignment:
Q  42 aaatggtttcttcattcatttctactgatgggattagga-------atcagatgttgtttagtgttttttctgcttaggctatgtagatttcaaatacca 134  Q
    |||||||||||| |||| |||||||||||||||||||||       |||||||||||||||||||||||||||||  | | ||||| |||||||||||||    
T  28004271 aaatggtttctttattcgtttctactgatgggattaggaatcaggaatcagatgttgtttagtgttttttctgctcggacaatgtatatttcaaatacca 28004370  T
Q  135 aagtagtgaatacttatcgtaaaaatatacaacaatatatagcctgtctg 184  Q
    | ||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  28004371 aggtagtgaatacttattgtaaaaatatacaactatatacagcctgtctg 28004420  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 28004562 - 28004641
Alignment:
Q  317 atcaattaaattcattataattttcttctttcaaaccataatttgataaatttactgttactaatggtttcttcgttcgt 396  Q
    |||||||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  28004562 atcaattaaatttattataattttcttatttcagtccataatttgataaatttactgttactaatggtttcttcgttcgt 28004641  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 27995443 - 27995532
Alignment:
Q  312 cacctatcaattaaattcattataattttcttctttcaaaccataatttgataaatttactgttactaatggtttcttcgttcgtctctg 401  Q
    ||||||| |||||||||||||||||||||||||||||   | |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  27995443 cacctattaattaaattcattataattttcttctttccgtctataatttgataattttatttttactaatggtttcttcgttcgtctctg 27995532  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 28004896 - 28004977
Alignment:
Q  317 atcaattaaattcattataattttcttctttcaaaccataatttgataaatttactgttactaatggtttcttcgttcgtct 398  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||| |||||| ||||||||||||||||| |||||||    
T  28004896 atcaattaaattcattataattttcttctttcagtccataatttaataagtttactattactaatggtttcttcattcgtct 28004977  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 27995112 - 27995196
Alignment:
Q  316 tatcaattaaattcattataattttcttctttcaaaccataatttgataaatttactgttactaatggtttcttcgttcgtctctg 401  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||| ||| ||||||||||| ||||||||||| ||||||    
T  27995112 tatcaattaaattcattataattttcttctttaaattcataatttgataaa-ttattgttactaatgatttcttcgttcatctctg 27995196  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 27995245 - 27995306
Alignment:
Q  122 atttcaaataccaaagtagtgaatacttatcgtaaaaatatacaacaatatatagcctgtct 183  Q
    |||||||||| |||   ||| |||||||||||||||||||||||||||||||||||||||||    
T  27995245 atttcaaatatcaagaaagtaaatacttatcgtaaaaatatacaacaatatatagcctgtct 27995306  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 28005040 - 28005078
Alignment:
Q  139 agtgaatacttatcgtaaaaatatacaacaatatatagc 177  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  28005040 agtgaatacttatcgtaaaaatatacaacaatacatagc 28005078  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 28005349 - 28005386
Alignment:
Q  140 gtgaatacttatcgtaaaaatatacaacaatatatagc 177  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28005349 gtgaatacttatcataaaaatatacaacaatatatagc 28005386  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 28004711 - 28004753
Alignment:
Q  138 tagtgaatacttatcgtaaaaatatacaacaatatatagcctg 180  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||    
T  28004711 tagtgaatacttatcgtaaaagtatacaactatatacagcctg 28004753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 28005219 - 28005251
Alignment:
Q  316 tatcaattaaattcattataattttcttctttc 348  Q
    ||||| |||||||||||||||||||||||||||    
T  28005219 tatcagttaaattcattataattttcttctttc 28005251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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