View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_53 (Length: 348)
Name: NF0547_high_53
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 39296565 - 39296229
Alignment:
| Q |
1 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgata |
100 |
Q |
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| T |
39296565 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgata |
39296466 |
T |
|
| Q |
101 |
ggtttttgaacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaaca |
200 |
Q |
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| T |
39296465 |
ggtttttgaactaggctcacaacttactgttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacg |
39296366 |
T |
|
| Q |
201 |
ttgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgt |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296365 |
ttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgt |
39296266 |
T |
|
| Q |
301 |
tttcatcgttgtttttgatcgtgagaacaagagaata |
337 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
39296265 |
tttcatcgttgtttgtgatcgtgagaacgagagaata |
39296229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 39289685 - 39289345
Alignment:
| Q |
1 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
39289685 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgata |
39289586 |
T |
|
| Q |
101 |
ggtttttgaacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaaca |
200 |
Q |
| |
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||||||||||| ||| || ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
39289585 |
ggtttttgaactaggttcataacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaaca |
39289486 |
T |
|
| Q |
201 |
ttgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag--- |
297 |
Q |
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|||||||| ||||| ||||||| |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| |
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| T |
39289485 |
ttgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaat |
39289386 |
T |
|
| Q |
298 |
tgttttcatcgttgtttttgatcgtgagaacaagagaataa |
338 |
Q |
| |
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|| ||| |||||| ||||||||||||| || ||||||||| |
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| T |
39289385 |
tggttttgtcgttgcttttgatcgtgagtacgagagaataa |
39289345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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