View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_56 (Length: 335)
Name: NF0547_high_56
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_56 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 30 - 295
Target Start/End: Original strand, 11797723 - 11797988
Alignment:
| Q |
30 |
catgcttcatagacagatggatcaaactcataatcaattcttttcgtttcgattaacannnnnnnnnnngtttattgtgtttctaaatgcaatgagaatt |
129 |
Q |
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| T |
11797723 |
catgcttcatagacagatggatcaaactcataattagttcttgtcgtttcgattaacatttttttatttatttattgtgtttctaaatgcaatgagaatt |
11797822 |
T |
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| Q |
130 |
gaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccact |
229 |
Q |
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| T |
11797823 |
gaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccact |
11797922 |
T |
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| Q |
230 |
caaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
295 |
Q |
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| T |
11797923 |
caaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcc |
11797988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 11675880 - 11676051
Alignment:
| Q |
124 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
223 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
11675880 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11675979 |
T |
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| Q |
224 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
295 |
Q |
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| T |
11675980 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11676051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 11684159 - 11684330
Alignment:
| Q |
124 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
223 |
Q |
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| T |
11684159 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11684258 |
T |
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| Q |
224 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
295 |
Q |
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| T |
11684259 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11684330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 11701770 - 11701956
Alignment:
| Q |
121 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
220 |
Q |
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| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
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| Q |
221 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
307 |
Q |
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| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgc |
11701956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 295
Target Start/End: Original strand, 11695984 - 11696147
Alignment:
| Q |
132 |
aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca |
231 |
Q |
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| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
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| Q |
232 |
aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
295 |
Q |
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| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcc |
11696147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 152 - 295
Target Start/End: Original strand, 11778983 - 11779126
Alignment:
| Q |
152 |
tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct |
251 |
Q |
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|||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
11778983 |
tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct |
11779082 |
T |
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| Q |
252 |
gctaagaatgtcaatatttgggctggaactgctgctctccttcc |
295 |
Q |
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| T |
11779083 |
gctaagaatgtgaatgtttgggctggaactgcttctctccttcc |
11779126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 16415 - 16601
Alignment:
| Q |
121 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
220 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
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| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
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| Q |
221 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
307 |
Q |
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| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgc |
16601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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