View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_59 (Length: 323)
Name: NF0547_high_59
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 19785277 - 19785558
Alignment:
| Q |
29 |
aaaggaaatctggatccaaaaataagcgtttgcaaccatcaaaccctttttctctaagaagaagaataaataaaaaacaacgccacaaccacagggagca |
128 |
Q |
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| T |
19785277 |
aaaggaaatctggatccaa---taagcgcttgcaaccatcaaacccttttgctctaagaacaagaataaataaaaaacaacgccacaaccacagggagca |
19785373 |
T |
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| Q |
129 |
caaaggtgcatggaaactcactgacaaagactctttgatgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaa |
228 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785374 |
caaaggtgcgtggaaactcactgacaaagactctttgatgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaa |
19785473 |
T |
|
| Q |
229 |
gagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctg |
313 |
Q |
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| T |
19785474 |
gagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctg |
19785558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 19796175 - 19796029
Alignment:
| Q |
167 |
tgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcg |
266 |
Q |
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| T |
19796175 |
tgactgaagaggtggcagcgagagctaaggttgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcg |
19796076 |
T |
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| Q |
267 |
ttacactaccgaccctcattttaagtttcttcatgattctatctctg |
313 |
Q |
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| T |
19796075 |
ttatactaccgatcccaattttaagtttcttcacgattgtatctctg |
19796029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 15835478 - 15835337
Alignment:
| Q |
171 |
tgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgttac |
270 |
Q |
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|||||||||||| ||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15835478 |
tgaagaggtggctgcgagagctaaggctcagaaagaaactgctcacgctttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgatac |
15835379 |
T |
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| Q |
271 |
actaccgaccctcattttaagtttcttcatgattctatctct |
312 |
Q |
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| T |
15835378 |
aatcgtgaccctgattttaagttccttcataattgtatctct |
15835337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 47713019 - 47712928
Alignment:
| Q |
222 |
gaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctg |
313 |
Q |
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|||| ||||||||| ||||| |||||||||||||||||||| || || | | |||||||||||||||||||||||||||| ||| |||| |
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| T |
47713019 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctg |
47712928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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