View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_6 (Length: 639)
Name: NF0547_high_6
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_6 |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 42 - 631
Target Start/End: Complemental strand, 1486994 - 1486407
Alignment:
| Q |
42 |
tagaagatatgtgttgaacctttcaacttcgtggcaaatctggacaaattcaaaaaataaatgaagcattt-gctaagcatgcaaatatacacatatatg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
1486994 |
tagaagatatgtgttgaacctttcaacttcgtggcaaatatggacaaattcaaaaaataaatgaagcattttgctaagcatgcaaatgtacacatatatg |
1486895 |
T |
|
| Q |
141 |
tttgcagttattannnnnnnnnaaaaaactaccaattattataaggataacatattttttcaatggttggcacacactaatgaataattaatccaccaaa |
240 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1486894 |
tttgcagttattatttaaa---aaaaaaataccaattattataaggataacatattttttcaatagttggcacacactaatgaataattaatccaccaaa |
1486798 |
T |
|
| Q |
241 |
tggaagacttggaagtcaagtcatcatattaatcaatataacctaatggaacttctaaaaagttttccataacacattgtagggtcattgttttcacttt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1486797 |
tggaagacttggaagtcaagtcatcatattaatcaatataacctaatggaacttctaaaaagttttccataacacattgtagggtcattgttttcacttt |
1486698 |
T |
|
| Q |
341 |
agtaatccaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgaggactcaggacaaaagaaaaattggccaaaagagat |
440 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1486697 |
agtaatcaaatttttccaaagaaaataaggttttcacacttgaaaacatgagagccgattatgagaactcaggacaaaagaaaaattggccaaaagagat |
1486598 |
T |
|
| Q |
441 |
ttactttaaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaaaccatcatttg |
540 |
Q |
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| T |
1486597 |
ttactttaaaatgatgcaatgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaaaccatcatttg |
1486498 |
T |
|
| Q |
541 |
tcactatgtcttatcagttctatacacactaagagtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
631 |
Q |
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| T |
1486497 |
tcactatgtcttatcagttctatacacactaagagtaattaaacaacaatgaaaattaccttagtttcattgttttcctttcttctctgct |
1486407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 163 - 631
Target Start/End: Complemental strand, 2065 - 1594
Alignment:
| Q |
163 |
aaaaaactaccaattattataaggataacat-attttttcaatggttggcacacactaatgaataattaatccaccaaatggaagacttggaagtcaagt |
261 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065 |
aaaaaaataccaattattataaggataacattattttttcaatagttggcacacactaatgaataattaatccaccaaatggaagacttggaagtcaagt |
1966 |
T |
|
| Q |
262 |
catcatattaatcaatataacctaatggaacttctaaaaagttttccataacacattgtagggtcattgttttcactttagtaatccaatttttccaaag |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1965 |
catcatattaatcaatataacctaatggaacttctaaaaagttttccataacacattgtagggtcattgttttcactttagtaatcaaatttttccaaag |
1866 |
T |
|
| Q |
362 |
aaaataaggttttcacacttgaaaacatgagagccgattatgaggactcaggacaaaagaaaaattggccaaaagaga-tttac-tttaaaatgatgcaa |
459 |
Q |
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| T |
1865 |
aaaataaggttttcacacttgaaaacatgagagccgattatgagaactcaggacaaaagaaaaattggccaaaagagattttacttttaaaatgatgcaa |
1766 |
T |
|
| Q |
460 |
tgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaaaccatcatttgtcactatgtcttatcagtt |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1765 |
tgtttagttcccattgcaactttatgagtctttttcaaagaaacttctcttgtttctgcagctttataaaaccatcatttgtcactatgtcttatcagtt |
1666 |
T |
|
| Q |
560 |
ctatacacactaagagtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
631 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1665 |
ctatacacactaagagtaattaaacaacaatgaaaattaccttagtttcattgttttcctttcttctctgct |
1594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 631
Target Start/End: Complemental strand, 5554452 - 5554395
Alignment:
| Q |
574 |
agtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
631 |
Q |
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| T |
5554452 |
agtaattaaacaacaatgaaaattacattagtgtcattgttttccttccttcgctgct |
5554395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 2453388 - 2453342
Alignment:
| Q |
44 |
gaagatatgtgttgaacctttcaacttcgtggcaaatctggacaaat |
90 |
Q |
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| T |
2453388 |
gaagatatgtgctgaacctctcaacttcgtggcaaatctggataaat |
2453342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 5561330 - 5561280
Alignment:
| Q |
316 |
attgtagggtcattgttttcacttt-agtaatccaatttttccaaagaaaa |
365 |
Q |
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||||||||||||||||||||||||| ||| || ||| |||||||||||||| |
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| T |
5561330 |
attgtagggtcattgttttcactttgagtgattcaaattttccaaagaaaa |
5561280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 628
Target Start/End: Complemental strand, 5859306 - 5859260
Alignment:
| Q |
582 |
aacaacaatgaaaattactttagtttcattgttttcctttcttctct |
628 |
Q |
| |
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||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
5859306 |
aacaacaatgagaattacaatactttcattgttttcctttcttctct |
5859260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 5554565 - 5554528
Alignment:
| Q |
440 |
tttactttaaaatgatgcaatgtttagttcccattgca |
477 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
5554565 |
tttactttgaaatgatgcaatgtttagttgccattgca |
5554528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 631
Target Start/End: Original strand, 5851963 - 5852020
Alignment:
| Q |
574 |
agtaatttaacaacaatgaaaattactttagtttcattgttttcctttcttctctgct |
631 |
Q |
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||||||| ||||||||||| |||||| ||| || ||||||||||||| ||||||||| |
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| T |
5851963 |
agtaattaaacaacaatgagaattacattacttccattgttttccttcattctctgct |
5852020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 5566072 - 5566020
Alignment:
| Q |
314 |
acattgtagggtcattgttttcac-tttagtaatccaatttttccaaagaaaa |
365 |
Q |
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|||||||||||||||||||||||| |||||| |||| | ||||||||||||| |
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| T |
5566072 |
acattgtagggtcattgttttcacttttagtgatcctaaatttccaaagaaaa |
5566020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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