View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_61 (Length: 314)
Name: NF0547_high_61
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 18428491 - 18428243
Alignment:
| Q |
30 |
caagatttgttgagtaaatcatttgattagtctc--------agtagtcgagcagtttgattttcgaattaaagaaattttaaattagtttataaaatta |
121 |
Q |
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| T |
18428491 |
caagatttgttgaataaatcatttgattagtcttgaaattgtagtagtcgagcagtttgattttcaaattaaagaaattttaaattagtttataaaatta |
18428392 |
T |
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| Q |
122 |
aaatattcgatcaaataacatttttgatcggccaatttagtatttaaaattgtcttgtaaaccttatcagatcgaaaatttaaattttaagaaattattt |
221 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||| |
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| T |
18428391 |
aaatattcgatcaaataatatttttgatcggccaatttagcatctaaaattttcttgtaaaccttgtcagatcgaaaatttaaatttcaagaaatcattt |
18428292 |
T |
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| Q |
222 |
tagaattttgttaatttaaagggacgtctttaattgatattcctctctg |
270 |
Q |
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| T |
18428291 |
tagaattttgttaatttgaagggacgtctttaattgatattcctctctg |
18428243 |
T |
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