View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_66 (Length: 298)
Name: NF0547_high_66
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 25377943 - 25378069
Alignment:
| Q |
1 |
atgatttcaagcactcgaaagttgagaatgcgttgagcaagcagccaaaaagatgtaacggaaaaggaaataaagaaaatttaatcacattaaatagcaa |
100 |
Q |
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| T |
25377943 |
atgatttcaagcactcgaaagttgagaatgcgttgagcaagcagccaaaaagatgtaacggaaaaggaaataaagaaaatttaatcacattaaatagcaa |
25378042 |
T |
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| Q |
101 |
caatgcaatagctcagcactaaataac |
127 |
Q |
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| T |
25378043 |
caatgcaatagcttagcactaaataac |
25378069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 25378101 - 25378241
Alignment:
| Q |
147 |
accatgcatacacatctacaatcatacctaataagataaataagcaaaaacataggtcaattctaacttaactaaagtttaacaaccatttcggtctcac |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378101 |
accatgcatacacatctacaatcatacctaataagataaataagcaaaaacataggttaattctaacttaactaaagtttaacaaccatttcggtctcac |
25378200 |
T |
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| Q |
247 |
aaaatctgagaaagttgtacgtaaaagatttagctgttcat |
287 |
Q |
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|||||| |||||| || |||||||||||||||| ||||||| |
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| T |
25378201 |
aaaatccgagaaaattatacgtaaaagatttagttgttcat |
25378241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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