View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_high_8 (Length: 622)

Name: NF0547_high_8
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_high_8
NF0547_high_8
[»] chr6 (5 HSPs)
chr6 (30-611)||(24947306-24947885)
chr6 (460-523)||(24954178-24954241)
chr6 (33-91)||(24955279-24955336)
chr6 (322-373)||(12664505-12664556)
chr6 (545-590)||(24954070-24954115)
[»] chr1 (2 HSPs)
chr1 (287-377)||(29552563-29552653)
chr1 (306-377)||(42738900-42738971)
[»] chr2 (2 HSPs)
chr2 (306-370)||(38398107-38398171)
chr2 (283-377)||(44189661-44189754)
[»] chr5 (1 HSPs)
chr5 (306-377)||(17174060-17174131)
[»] chr7 (1 HSPs)
chr7 (287-362)||(37219616-37219691)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 30 - 611
Target Start/End: Complemental strand, 24947885 - 24947306
Alignment:
Q  30 cttaattcacaagacttaaattcgaactcaatatcagagacatatgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947885 cttaattcacaagacttaaattcgaactcaatatcagagacatatgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatata 24947786  T
Q  130 aatagcttactttttatgaccgtaagtagttctannnnnnncaaaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaa----- 224  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  24947785 aatagcttactttttatgaccgtaagtagttctatttttttcaaaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaagtgaa 24947686  T
Q  225 -actacgcaccaaaataacagaaacatacacaatcgagtttactgtacaaacagcagaaacacaaacagacaatactaaataacagctgaaaaacacaaa 323  Q
     ||||||||||||||||||||||||||||| ||        || | | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24947685 aactacgcaccaaaataacagaaacatacagaa--------acagcagaaacagcagaaacacagacagacaatactaaataacagctgaaaaacacaaa 24947594  T
Q  324 ataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatg 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947593 ataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgaccggaagtagttctatttaatgaaacgaaattcagcatatgtgaatg 24947494  T
Q  424 ggatattaggatccatccttttctatttaacaagagattgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 523  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947493 ggatattaggatccatccttttctatttaacatgagattgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 24947394  T
Q  524 tgcaaatgttgtactatcttcctttcaaattatataccagctacctttactaaatcattgataaatatgcaactggcacttgattcat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947393 tgcaaatgttgtactatcttcctttcaaattatataccagctacctttactaaatcattgataaatatgcaactggcacttgattcat 24947306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 523
Target Start/End: Complemental strand, 24954241 - 24954178
Alignment:
Q  460 attgttactaagcaaccgttaaaaaattgagagaaagcatgcaattcaaacttaataacaaaga 523  Q
    |||| |||||||||||| |||||||  | | |||||||||||||||||||||||||||||||||    
T  24954241 attgctactaagcaacccttaaaaatctaacagaaagcatgcaattcaaacttaataacaaaga 24954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 24955336 - 24955279
Alignment:
Q  33 aattcacaagacttaaattcgaactcaatatcagagacatatgttccattttaatcaac 91  Q
    |||||||||||||||||||| |||||||||||| ||| | |||||| ||||||||||||    
T  24955336 aattcacaagacttaaattctaactcaatatca-agagacatgttcaattttaatcaac 24955279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 12664505 - 12664556
Alignment:
Q  322 aaataggattaagcctccgaaattggtaatcataatcgaaagtgacatattt 373  Q
    |||| |||||||||| || ||||||||||||||||||||| || ||||||||    
T  12664505 aaatgggattaagccaccaaaattggtaatcataatcgaatgtaacatattt 12664556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 590
Target Start/End: Complemental strand, 24954115 - 24954070
Alignment:
Q  545 ctttcaaattatataccagctacctttactaaatcattgataaata 590  Q
    |||||||||| ||| |||||||||||| || |||||||||||||||    
T  24954115 ctttcaaattgtattccagctaccttttctgaatcattgataaata 24954070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 29552563 - 29552653
Alignment:
Q  287 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 377  Q
    ||||| |||| ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  29552563 aaacaaacaacactaaataacagtagaaaaatacaaaataggattaagcctccaaaattggtaatcataatcgaaagcaacatatttcgac 29552653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 42738971 - 42738900
Alignment:
Q  306 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 377  Q
    |||||||||| ||| |||||| ||||||| || | |||||||||||||||||||||||| | ||||||||||    
T  42738971 acagctgaaacacagaaaataagattaagtcttcaaaattggtaatcataatcgaaagtaatatatttcgac 42738900  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 38398171 - 38398107
Alignment:
Q  306 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacata 370  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  38398171 acagttgaaacacacataataggattaagcctccaaaattggtaatcataatcgaaagtaacata 38398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 44189661 - 44189754
Alignment:
Q  283 acacaaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 377  Q
    ||||| |||||||| |||| || ||||| ||||||||||||||| ||||||| |||  |||||||| |||| |||||||||| ||||||||||||    
T  44189661 acacacacagacaacactagatgacagcagaaaaacacaaaataagattaagtctctaaaattggt-atcacaatcgaaagtaacatatttcgac 44189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 17174131 - 17174060
Alignment:
Q  306 acagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaagtgacatatttcgac 377  Q
    |||| ||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  17174131 acagttgaaacacataaaataggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgac 17174060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 37219616 - 37219691
Alignment:
Q  287 aaacagacaatactaaataacagctgaaaaacacaaaataggattaagcctccgaaattggtaatcataatcgaaa 362  Q
    ||||| |||| |||||||||||   || |||||||||||||||||||||||   ||||||||||||||||||||||    
T  37219616 aaacaaacaacactaaataacactagagaaacacaaaataggattaagcctaaaaaattggtaatcataatcgaaa 37219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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