View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_high_84 (Length: 269)

Name: NF0547_high_84
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_high_84
NF0547_high_84
[»] chr1 (13 HSPs)
chr1 (91-269)||(6723555-6723733)
chr1 (8-68)||(46880088-46880151)
chr1 (27-68)||(48420016-48420057)
chr1 (91-167)||(27264763-27264839)
chr1 (28-68)||(48419589-48419629)
chr1 (8-68)||(1580662-1580725)
chr1 (28-61)||(8096275-8096308)
chr1 (8-68)||(11344966-11345026)
chr1 (28-61)||(12301050-12301083)
chr1 (28-61)||(34748854-34748887)
chr1 (8-68)||(25298080-25298145)
chr1 (28-68)||(27904346-27904386)
chr1 (8-71)||(43723858-43723922)
[»] chr3 (7 HSPs)
chr3 (22-68)||(7777597-7777643)
chr3 (28-68)||(30102546-30102585)
chr3 (11-68)||(14265823-14265883)
chr3 (8-60)||(42896786-42896841)
chr3 (28-68)||(35379888-35379928)
chr3 (32-68)||(38358677-38358713)
chr3 (28-68)||(40360351-40360390)
[»] chr2 (15 HSPs)
chr2 (8-68)||(26403274-26403337)
chr2 (8-68)||(18072403-18072465)
chr2 (28-81)||(41122685-41122738)
chr2 (28-68)||(13594265-13594305)
chr2 (28-67)||(42949759-42949798)
chr2 (8-68)||(12069471-12069532)
chr2 (8-68)||(12069666-12069727)
chr2 (28-61)||(3357692-3357725)
chr2 (8-68)||(24005076-24005136)
chr2 (8-64)||(28146100-28146159)
chr2 (8-68)||(36080255-36080318)
chr2 (28-61)||(42060432-42060465)
chr2 (8-68)||(7603651-7603709)
chr2 (28-68)||(30977004-30977043)
chr2 (8-68)||(38702216-38702281)
[»] chr7 (10 HSPs)
chr7 (28-68)||(2475063-2475103)
chr7 (8-68)||(23050894-23050955)
chr7 (28-68)||(19371752-19371792)
chr7 (22-68)||(47901797-47901842)
chr7 (28-61)||(1786990-1787023)
chr7 (28-68)||(7525839-7525880)
chr7 (27-68)||(48624787-48624828)
chr7 (28-68)||(10040437-10040477)
chr7 (28-68)||(25750875-25750914)
chr7 (28-68)||(39434962-39435001)
[»] chr6 (7 HSPs)
chr6 (28-68)||(24062671-24062711)
chr6 (28-68)||(20715861-20715901)
chr6 (21-68)||(32531152-32531199)
chr6 (31-68)||(10460153-10460189)
chr6 (12-68)||(22535450-22535507)
chr6 (28-68)||(12342374-12342414)
chr6 (28-68)||(31861872-31861911)
[»] chr4 (5 HSPs)
chr4 (6-68)||(27376310-27376375)
chr4 (28-68)||(20702383-20702423)
chr4 (8-61)||(27088525-27088578)
chr4 (28-66)||(36927004-36927042)
chr4 (8-60)||(13781511-13781566)
[»] chr5 (6 HSPs)
chr5 (28-68)||(7938128-7938168)
chr5 (92-138)||(29651644-29651690)
chr5 (8-68)||(7649032-7649095)
chr5 (8-68)||(38696980-38697042)
chr5 (8-61)||(40493897-40493949)
chr5 (28-68)||(7464101-7464140)
[»] chr8 (3 HSPs)
chr8 (10-79)||(38498516-38498582)
chr8 (28-60)||(18994712-18994744)
chr8 (8-67)||(24023902-24023961)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 6723555 - 6723733
Alignment:
Q  91 gaagaaggtaaaatgaattatattaccaaccaaaaggagtccttcctaatacaaggtttacttaggaaaaaacagcaaatccaaacattatttacaaaat 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  6723555 gaagaagttaaaatgaattatattaccaaccaaaaggagtccttcctagtataaggtgtacataggaaaaaacagtaaatccaaacattatttacaaaat 6723654  T
Q  191 ttatcgatcaccagaaaacagaagaaacaaaaagctattagcctattccaagcatggtgaatggactaagccaccatcc 269  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6723655 ttactaatcaccagaaaacagaagaaacaaaaagctattagcctattccaagcatggtgaacggactaagccaccatcc 6723733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 46880151 - 46880088
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |   |||||||||||||||| ||||||||||||||||| ||||||    
T  46880151 ccaacaatatatcaaaaaaatataatctaaattcttttttttaatgacaccaacaacaatcttt 46880088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 48420057 - 48420016
Alignment:
Q  27 aaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  48420057 aaatctaaattctttcttttaatgacaccaacaacgatcttt 48420016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 27264839 - 27264763
Alignment:
Q  91 gaagaaggtaaaatgaattatattaccaaccaaaaggagtccttcctaatacaaggtttacttaggaaaaaacagca 167  Q
    ||||||| |||||||||||||||||||| |  ||| ||||||||||||| |||||   |||| ||||| ||||||||    
T  27264839 gaagaagttaaaatgaattatattaccacctcaaaagagtccttcctaacacaagacgtactaaggaagaaacagca 27264763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 48419589 - 48419629
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  48419589 aatctaaattcttttttttaatgataccaacaacgatcttt 48419629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1580725 - 1580662
Alignment:
Q  8 ccaacaatatagcaaaaataaatctaaa---ttctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |||||||||   || ||||| ||||||||||||||||| ||||||    
T  1580725 ccaacaatataacaaaaaaaaatctaaaattttattttttttaatgacaccaacaacaatcttt 1580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 8096308 - 8096275
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  8096308 aatctaaattcttttttttaatgacaccaacaac 8096275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 11345026 - 11344966
Alignment:
Q  8 ccaacaatatagcaaaaata-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||  |||||| | |||||||||||||||| ||||||||||||||||| ||||||    
T  11345026 ccaacaatatgacaaaaaaataatctaaattcttttt-ttaatgacaccaacaacaatcttt 11344966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 12301083 - 12301050
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  12301083 aatctaaattcttttttttaatgacaccaacaac 12301050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 34748887 - 34748854
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  34748887 aatctaaattcttttttttaatgacaccaacaac 34748854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 25298145 - 25298080
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttatt--aatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |   |||||||||||||||| ||  ||||||||||||||||||||||    
T  25298145 ccaacaatataacaaaaaaatataatctaaattcttttttttttaatgacaccaacaacgatcttt 25298080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 27904346 - 27904386
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  27904346 aatctgaattcttttttttaatgacaccaacaacaatcttt 27904386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 43723858 - 43723922
Alignment:
Q  8 ccaacaatatagcaaaaata-aatctaaattctttttattaatgacaccaacaacgatctttttt 71  Q
    ||||||||||| |||||  | ||||||||||| |||| ||||||||||| ||||| |||||||||    
T  43723858 ccaacaatataacaaaataataatctaaattcgtttttttaatgacaccgacaacaatctttttt 43723922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 7777643 - 7777597
Alignment:
Q  22 aaaataaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  7777643 aaaaaaaatctaaattcttttttttaatgacaccaacaacgatcttt 7777597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 30102546 - 30102585
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30102546 aatctaaattcttttt-ttaatgacaccaacaacgatcttt 30102585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 14265883 - 14265823
Alignment:
Q  11 acaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||| ||||||||   |||||||||||||||| ||||||||| ||||||| ||||||    
T  14265883 acaatataacaaaaatatataatctaaattcttttttttaatgacatcaacaacaatcttt 14265823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 42896786 - 42896841
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaa 60  Q
    ||||||||||| |||||| |   |||||||||||||||| ||||||||||||||||    
T  42896786 ccaacaatataacaaaaaaatataatctaaattcttttttttaatgacaccaacaa 42896841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 35379928 - 35379888
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  35379928 aatctaaattcctttttttaatgacaccaacaacaatcttt 35379888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 38358713 - 38358677
Alignment:
Q  32 taaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  38358713 taaattcttttttttaatgacaccaacaacaatcttt 38358677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 40360390 - 40360351
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  40360390 aatctaaattcttttt-ttaatgacaccaacaacaatcttt 40360351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 26403274 - 26403337
Alignment:
Q  8 ccaacaatatagcaaaaa---taaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| ||||||   |||||||||||||||||| ||||||||||||||||| ||||||    
T  26403274 ccaacaatataacaaaaaaattaaatctaaattcttttttttaatgacaccaacaacaatcttt 26403337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18072465 - 18072403
Alignment:
Q  8 ccaacaatatagc-aaaaata-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  18072465 ccaacaatataacgaaaaatataatctaaattcttttttttaatgacaccaacaacaatcttt 18072403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 41122738 - 41122685
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttttttgtacaaaatg 81  Q
    |||||||||||||||| ||||||||||||||||| |||||| || || ||||||    
T  41122738 aatctaaattcttttttttaatgacaccaacaacaatctttattataaaaaatg 41122685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 13594265 - 13594305
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  13594265 aatctaaattcttttttttaatgacatcaacaacgatcttt 13594305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 42949798 - 42949759
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatctt 67  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  42949798 aatctaaattcttttttttaatgacaccaacaacaatctt 42949759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12069532 - 12069471
Alignment:
Q  8 ccaacaatatagcaaaaa-ta-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| || |||||||||||||||| ||||||||||||||||| ||||||    
T  12069532 ccaacaatataacaaaaaatataatctaaattcttttt-ttaatgacaccaacaacaatcttt 12069471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12069727 - 12069666
Alignment:
Q  8 ccaacaatatagcaaaaa-ta-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| || |||||||||||||||| ||||||||||||||||| ||||||    
T  12069727 ccaacaatataacaaaaaatataatctaaattcttttt-ttaatgacaccaacaacaatcttt 12069666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 3357692 - 3357725
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  3357692 aatctaaattcttttttttaatgacaccaacaac 3357725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 24005076 - 24005136
Alignment:
Q  8 ccaacaatatagcaa-aaataaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| ||| ||| |||| |||| ||||||| ||||||||||||||||||||||||    
T  24005076 ccaacaatataacaacaaaaaaatataaaatcttttt-ttaatgacaccaacaacgatcttt 24005136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 28146159 - 28146100
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaacgat 64  Q
    |||| |||||| ||||||||   ||||||||||||| || ||||||||||||||||||||    
T  28146159 ccaataatataacaaaaatatataatctaaattcttgtttttaatgacaccaacaacgat 28146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 36080318 - 36080255
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |   ||||||||||||| || ||||||||||||||||| ||||||    
T  36080318 ccaacaatataacaaaaaaatataatctaaattcttatttttaatgacaccaacaacaatcttt 36080255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 42060432 - 42060465
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  42060432 aatctaaattcttttttttaatgacaccaacaac 42060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 7603651 - 7603709
Alignment:
Q  8 ccaacaatatagcaaaaataaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |||| |||||| ||||| |||||||||| |||||||||||||    
T  7603651 ccaacaatataacaaaaa-aaat-taaattattttttttaatgacacaaacaacgatcttt 7603709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 30977004 - 30977043
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  30977004 aatctaaattcttttt-ttaatgacaccaacaacaatcttt 30977043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 38702216 - 38702281
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctt--tttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| ||||||||   |||||||||||||  ||| ||||||||||||||||| ||||||    
T  38702216 ccaacaatataacaaaaatatataatctaaattcttatttttttaatgacaccaacaacaatcttt 38702281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 2475063 - 2475103
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2475063 aatctaaattcttttttttaatgacaccaacaacgatcttt 2475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 23050955 - 23050894
Alignment:
Q  8 ccaacaatatagcaaaaataaa-tctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| ||| |||||||||||||| |||||||||| |||||| ||||||    
T  23050955 ccaacaatataacaaaaaaaaaatctaaattcttttttttaatgacacaaacaacaatcttt 23050894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 19371792 - 19371752
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  19371792 aatctaaattcttttttttaatgacaccaacaacaatcttt 19371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 47901842 - 47901797
Alignment:
Q  22 aaaataaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  47901842 aaaaaaaatctaaattcttttt-ttaatgacaccaacaacaatcttt 47901797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 1787023 - 1786990
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaac 61  Q
    |||||||||||||||| |||||||||||||||||    
T  1787023 aatctaaattcttttttttaatgacaccaacaac 1786990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 7525880 - 7525839
Alignment:
Q  28 aatctaaattctttttatt-aatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  7525880 aatctaaattctttttttttaatgacaccaacaacgatcttt 7525839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 48624787 - 48624828
Alignment:
Q  27 aaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  48624787 aaatctaaattctttgttttagtgacaccaacaacgatcttt 48624828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 10040477 - 10040437
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  10040477 aatctaaattcttttttttaatgacgccaacaacaatcttt 10040437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 25750914 - 25750875
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  25750914 aatctaaattcttttt-ttaatgacaccaacaacaatcttt 25750875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 39435001 - 39434962
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  39435001 aatctaaattcttttt-ttaatgacaccaacaacaatcttt 39434962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 24062711 - 24062671
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  24062711 aatctaaattcttttttttaatgacaccaacaacgatcttt 24062671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20715901 - 20715861
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  20715901 aatctaaattcttttttttaatgacaccaacaacaatcttt 20715861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 32531199 - 32531152
Alignment:
Q  21 aaaaataaatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||    
T  32531199 aaaaaaaaatctaaattcttttttctaatgacaccaacaacaatcttt 32531152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10460189 - 10460153
Alignment:
Q  31 ctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10460189 ctaaattcttttt-ttaatgacaccaacaacgatcttt 10460153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 22535450 - 22535507
Alignment:
Q  12 caatatagcaaaaata-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||| |||||| | |||||||||||||||| ||||||||||||| ||| ||||||    
T  22535450 caatataacaaaaaaataatctaaattctttttcttaatgacaccaaaaacaatcttt 22535507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 12342374 - 12342414
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||| | |||||||||| |||||||||||||    
T  12342374 aatctaaattctttattttaatgacacaaacaacgatcttt 12342414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 31861911 - 31861872
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  31861911 aatctaaattcttttt-ttaatgacaccaaaaacgatcttt 31861872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 27376310 - 27376375
Alignment:
Q  6 ctccaacaatatagcaaaaa--ta-aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||||| ||||||  || |||||||||||||||| ||||||||||||||||| ||||||    
T  27376310 ctccaacaatataacaaaaaattataatctaaattcttttttttaatgacaccaacaacaatcttt 27376375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20702423 - 20702383
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  20702423 aatctaaattctttttttcaatgacaccaacaacgatcttt 20702383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27088578 - 27088525
Alignment:
Q  8 ccaacaatatagcaaaaata-aatctaaattctttttattaatgacaccaacaac 61  Q
    |||| |||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  27088578 ccaataatataacaaaaatataatctaaattcttttt-ttaatgacaccaacaac 27088525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 36927042 - 36927004
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatct 66  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  36927042 aatctaaattcttttttttaatgacaccaacaacaatct 36927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 13781566 - 13781511
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaa 60  Q
    ||||||||||| ||||||||   ||||||||||||||||  |||||||||||||||    
T  13781566 ccaacaatataacaaaaatatataatctaaattcttttttataatgacaccaacaa 13781511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 7938128 - 7938168
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  7938128 aatctaaattcttttttttaatgacacgaacaacgatcttt 7938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 29651644 - 29651690
Alignment:
Q  92 aagaaggtaaaatgaattatattaccaaccaaaaggagtccttccta 138  Q
    |||||| |||||||||||||||||||| | |||| ||||||||||||    
T  29651644 aagaagctaaaatgaattatattaccacctaaaaagagtccttccta 29651690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 7649032 - 7649095
Alignment:
Q  8 ccaacaatatagcaaaaataaatc---taaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| ||||    |||||||||||| ||||||||||||||||| ||||||    
T  7649032 ccaacaatataacaaaaaaaaataatataaattcttttttttaatgacaccaacaacaatcttt 7649095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 38696980 - 38697042
Alignment:
Q  8 ccaacaatatagcaaaaata---aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    ||||||||||| |||||| |   |||||||||||||||| ||||||||||||||||| ||||||    
T  38696980 ccaacaatataacaaaaaaatataatctaaattcttttt-ttaatgacaccaacaacaatcttt 38697042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 40493949 - 40493897
Alignment:
Q  8 ccaacaatatagcaaaaataaatctaaattctttttattaatgacaccaacaac 61  Q
    |||| |||||| |||||| |||||||||| |||||| |||||||||||||||||    
T  40493949 ccaataatataacaaaaaaaaatctaaatacttttt-ttaatgacaccaacaac 40493897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 7464101 - 7464140
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaacgatcttt 68  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  7464101 aatctaaattcttttt-ttaatgacaccaacaacaatcttt 7464140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 38498582 - 38498516
Alignment:
Q  10 aacaatatagcaaaaataaatctaaattctttttattaatgacaccaacaacgatcttttttgtacaaaa 79  Q
    ||||||||| |||||| ||||||||||||||| |  |||||||||||||||| |||||| ||||| ||||    
T  38498582 aacaatataacaaaaa-aaatctaaattctttct--taatgacaccaacaacaatctttattgtagaaaa 38498516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 18994712 - 18994744
Alignment:
Q  28 aatctaaattctttttattaatgacaccaacaa 60  Q
    |||||||||||||||| ||||||||||||||||    
T  18994712 aatctaaattcttttttttaatgacaccaacaa 18994744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 24023902 - 24023961
Alignment:
Q  8 ccaacaatatagcaaaaata-aatctaaattctttttattaatgacaccaacaacgatctt 67  Q
    ||||||||||| |||||||| ||||||||||  |||| ||| |||||||||||||||||||    
T  24023902 ccaacaatataacaaaaatataatctaaattaatttt-ttagtgacaccaacaacgatctt 24023961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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