View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_87 (Length: 264)
Name: NF0547_high_87
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_87 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31404002 - 31403769
Alignment:
| Q |
1 |
aaatattaaaagaacaaaattgaatacatattcagcattgtcaaagccacattcagctataattgttatgctctcttattttatcaaatcaaaggaatca |
100 |
Q |
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| T |
31404002 |
aaatattaaaagaacaaaattgaatacatattcagcattgtcaa-gccatattcagctataattgttatgctctcttattttatcaaatcaaaggaatca |
31403904 |
T |
|
| Q |
101 |
ggagtcagaaccaatcaactataatcattggtatctacaaaattccacatttctgaagacaatatttcaagtttcattctagacaatatcaagaaccaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31403903 |
ggagtcagaaccaatcaactataatcattggtatctacaaaattccacattgctgaagacaatatttcaagtttcattctagacaatatcaagaaccaaa |
31403804 |
T |
|
| Q |
201 |
ttcattttatgactggagcatatcatagttacttg |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
31403803 |
ttcattttatgactggagcatatcatagttacttg |
31403769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 31336681 - 31336785
Alignment:
| Q |
105 |
tcagaaccaatcaactataatcattggtatctacaaaattccacatttctgaagacaatatttcaagtttcattctagacaata-tcaagaaccaaattc |
203 |
Q |
| |
|
|||| |||| ||||||||||| | |||| ||| ||||| ||||||||||||||||| | |||||| ||||| ||||||| | | ||||||||||||||| |
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| T |
31336681 |
tcaggaccagtcaactataattactggttcctataaaataccacatttctgaagacagtctttcaaatttcagtctagacgacagtcaagaaccaaattc |
31336780 |
T |
|
| Q |
204 |
atttt |
208 |
Q |
| |
|
||||| |
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|
| T |
31336781 |
atttt |
31336785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31334915 - 31334959
Alignment:
| Q |
5 |
attaaaagaacaaaattgaatacatattcagcattgtcaaagcca |
49 |
Q |
| |
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|||||||||||| ||||||||||||||||| || ||||||||||| |
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|
| T |
31334915 |
attaaaagaacacaattgaatacatattcatcaatgtcaaagcca |
31334959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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