View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_high_93 (Length: 259)
Name: NF0547_high_93
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_high_93 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 8738760 - 8739007
Alignment:
| Q |
4 |
atgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactgg |
103 |
Q |
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| T |
8738760 |
atgacccggaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactgg |
8738859 |
T |
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| Q |
104 |
aattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccctgtt |
203 |
Q |
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| T |
8738860 |
aattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccatgtt |
8738959 |
T |
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| Q |
204 |
aggaccaattgggttatacatgagtatcatgatgctgtcacctatgat |
251 |
Q |
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| T |
8738960 |
aggaccaactgggttatacatgagtatcatgatgctgtcacctttgat |
8739007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 14372496 - 14372433
Alignment:
| Q |
4 |
atgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
67 |
Q |
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| T |
14372496 |
atgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa |
14372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8705231 - 8705294
Alignment:
| Q |
4 |
atgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
67 |
Q |
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| T |
8705231 |
atgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa |
8705294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 8722308 - 8722409
Alignment:
| Q |
4 |
atgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactgg |
103 |
Q |
| |
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||||| ||||||||||||||||||||||| | |||| ||||| || | |||| |||||||| ||| ||| ||||| || ||||||||||||||||| |
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| T |
8722308 |
atgactcggaatggtttttcttgtgtcctcgcaattacaagtatcaaaggtgtaataagtttaagagaggaacagagtttggattttggaaagctactgg |
8722407 |
T |
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| Q |
104 |
aa |
105 |
Q |
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|| |
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| T |
8722408 |
aa |
8722409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 8740315 - 8740370
Alignment:
| Q |
12 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
67 |
Q |
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||||||||||||||||||||| ||| || ||||| ||||||||||||| |||||| |
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| T |
8740315 |
gaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
8740370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 8690959 - 8691015
Alignment:
| Q |
12 |
gaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac |
68 |
Q |
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|||||||||||||| |||||| | ||||| || |||||||| ||||||| ||||||| |
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| T |
8690959 |
gaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac |
8691015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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