View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_1 (Length: 768)
Name: NF0547_low_1
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 238 - 516
Target Start/End: Complemental strand, 5500199 - 5499903
Alignment:
| Q |
238 |
ttagggagctttaataataaa-taaaaatgtaacttttgcatgtatattattttattttttgacagggtatgtgtatttattatcaaacatggaagaata |
336 |
Q |
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| T |
5500199 |
ttagggagctttaataataaaataaaaatgtaacttttgcatgtatattattttattttttgacagggtatgtgtatttattatcaaacatggaagaata |
5500100 |
T |
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| Q |
337 |
aaacactgacatataatcaaca--------------catacatctcctagatgcaatgtatacctctc---nnnnnnngtattaataaaatatggatcac |
419 |
Q |
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| T |
5500099 |
aaacactgacatataatcaacacatatcatatgacacatacatatcctagatgcaatgtattcttctcaaaaaaaaaaatattaataaaatatggatcac |
5500000 |
T |
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| Q |
420 |
ctgtaatatttgtacatcccaaatttatttacacgtattcaacatataattttctctctttctatcacatcgtcaatctatcacatatatcaaatca |
516 |
Q |
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| T |
5499999 |
ctgtaatatttgtacatcttaaatttatttacgcatattcaacacctcattttttctcttcctatcacgtcatcaatctatcacatatatcgaatca |
5499903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 558 - 740
Target Start/End: Complemental strand, 5499896 - 5499712
Alignment:
| Q |
558 |
atatttctatttctcttaacgcgtatgtatacacatttggctttgggttgtctaagaaattttttctaatatggatagcaataatctaaaagaaagacat |
657 |
Q |
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|||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5499896 |
atatctctatttctcttaatgcatatgtatacacgtttggctttgggttgtctaagaaattttttctaatatggatagcaataatctaaaagaaagacat |
5499797 |
T |
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| Q |
658 |
attttcattcaaaatactgaaaagtggaaatggaagaa---aaataatgtatgaactatgaagtttaattaccttgagctagctct |
740 |
Q |
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| T |
5499796 |
attttcattc-aaataatgaaaagtggaagttaaaaaaaacaaaaattgtatgaactatgaagtttaattaccttgagctagctct |
5499712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 5500407 - 5500321
Alignment:
| Q |
11 |
cataggtagtaaatacttataagaatatcagtaaacaaatcatatatagaaatgtaaaaatacatttaaacatccctatgttctata |
97 |
Q |
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| T |
5500407 |
cataggtagtaaatagttataagaatatcagtaaacaaatcatatatagaaatggaaaaatacatttaaacatccctatgttctata |
5500321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 5500296 - 5500240
Alignment:
| Q |
169 |
aaatataactctagcattaaatgttcggataaactattcaaaaagtaactttaataa |
225 |
Q |
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| T |
5500296 |
aaatataactctagcattaaatgttcggataaactattcaaaaagtaactttaataa |
5500240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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