View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_10 (Length: 594)
Name: NF0547_low_10
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 29 - 587
Target Start/End: Complemental strand, 4042527 - 4041968
Alignment:
| Q |
29 |
aatatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttggcaaaattgtgtaacttgaaatgt--taattaagg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4042527 |
aatatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttagcaaaattgtgtaacttgaaatgtgttaattaagg |
4042428 |
T |
|
| Q |
127 |
tacttttggaatagggcttaatcaaaaccataaaaagtacagaacttcagagaaactttggatttaaaagtgaactgacannnnnnnnnnaaaattaaaa |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
4042427 |
tacttttggaatagggcttaatcaaaaccataaaaagtatagaacttcagagaaactttggatttaaaagtgaa-tgacatttttttttataaattaaat |
4042329 |
T |
|
| Q |
227 |
agattccataaaaatcttcatatctgagagttattttgtgaaatgaaaatgatttaaacacctttaacttcgcacttcaaatatgactgaaaatggtgtt |
326 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
4042328 |
aggttccataaaaatcttcatatctgaaagttattttgtgaaatgaaaataatttaaacacctttaacttcgtacttcaaataggactgaaaatggtgtt |
4042229 |
T |
|
| Q |
327 |
tgaaactcatccacggtggtgtgacagtggctctctcgcgaaggtgcccaaaatacaataagcaataaataagagagattttacgatgaggaacactgat |
426 |
Q |
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||||| ||| | |||||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
4042228 |
tgaaattcacctacggtggtgttacagtgactctctcgtgaaggtgcccaaaatacaataagtaataaataagagagattttacgatgaggaacattgat |
4042129 |
T |
|
| Q |
427 |
cctacatttaagactcatctctattttacgtagaagttaggttttttcaatatcttaacggaacactctatttgtttttgagaaataagataatctatgc |
526 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4042128 |
cctacgtttaagactcgtctctattttacgtagaagttaggttttttcaatatcgtaacggaacactctatttgtttttgagaaataagataatctatgc |
4042029 |
T |
|
| Q |
527 |
ttaaaaatatatatttcataaacccatgtaatttatttagtttttggtatcattcatctca |
587 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4042028 |
ttaaaaatatatatttcataaacccatataatttatttagtttttggtatcattcatctca |
4041968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 4118149 - 4118252
Alignment:
| Q |
30 |
atatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttggcaaaattgtgtaacttgaaatgttaattaaggtac |
129 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||| || | |||||||||||||| | ||||||||| ||||||| |
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| T |
4118149 |
atatgtttcatgtgatggtatataaagtttgacatcattgtatggtcaaaactagttcaattcaacaaaattgtgtaaccttaaatgttaaataaggtat |
4118248 |
T |
|
| Q |
130 |
tttt |
133 |
Q |
| |
|
|||| |
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|
| T |
4118249 |
tttt |
4118252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 4118448 - 4118507
Alignment:
| Q |
145 |
taatcaaaaccataaaaa-gtacagaacttcagagaaactttggatttaaaagtgaactg |
203 |
Q |
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|||||||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
4118448 |
taatcaaaaccataaaaatgtatagaacttcggaggaaatttggatttaaaagtgaactg |
4118507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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