View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_100 (Length: 282)

Name: NF0547_low_100
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_100
NF0547_low_100
[»] chr8 (4 HSPs)
chr8 (80-253)||(30634107-30634280)
chr8 (205-253)||(1175172-1175220)
chr8 (16-48)||(30633967-30633999)
chr8 (205-253)||(35673335-35673383)
[»] chr1 (2 HSPs)
chr1 (205-253)||(44782186-44782234)
chr1 (205-253)||(46679761-46679809)
[»] chr5 (8 HSPs)
chr5 (205-253)||(10410857-10410905)
chr5 (205-253)||(8081561-8081609)
chr5 (205-253)||(25725811-25725859)
chr5 (202-253)||(40382757-40382808)
chr5 (205-253)||(25506941-25506989)
chr5 (205-253)||(6742601-6742649)
chr5 (209-253)||(10412430-10412474)
chr5 (205-249)||(25502028-25502072)
[»] chr4 (2 HSPs)
chr4 (205-253)||(4847691-4847739)
chr4 (205-253)||(28395556-28395604)
[»] chr3 (4 HSPs)
chr3 (205-253)||(41874569-41874617)
chr3 (205-250)||(4602355-4602400)
chr3 (205-250)||(27682253-27682298)
chr3 (205-250)||(28133782-28133827)
[»] chr2 (6 HSPs)
chr2 (205-252)||(14007799-14007846)
chr2 (200-253)||(45035214-45035267)
chr2 (205-253)||(1015780-1015828)
chr2 (205-253)||(17308746-17308794)
chr2 (205-253)||(45033419-45033467)
chr2 (205-253)||(3372455-3372503)
[»] chr6 (1 HSPs)
chr6 (205-253)||(15689093-15689141)
[»] chr7 (2 HSPs)
chr7 (213-253)||(29924689-29924729)
chr7 (213-253)||(21464571-21464611)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 30634107 - 30634280
Alignment:
Q  80 gtgatattacactttagctatgtcagttttctatttaatttccctgaatgttacgtaataatacattttggctattgtaagtagcataaatttaacaata 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30634107 gtgatattacactttagctatgtcagttttctatttaatttccctgaatgttacgtaataatacattttggctattgtaagcagcataaatttaacaata 30634206  T
Q  180 ttgcatgagttagagtatcttctgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30634207 ttgcatgagttagagtatcttctgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagata 30634280  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 1175220 - 1175172
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  1175220 tatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagata 1175172  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 30633967 - 30633999
Alignment:
Q  16 aggtaaggattaaagcaaaagaaagaaaaacac 48  Q
    |||||||||||||||||||||||||||||||||    
T  30633967 aggtaaggattaaagcaaaagaaagaaaaacac 30633999  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 35673335 - 35673383
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||||| || ||||||| ||||||||| |||||||||||||||||||||    
T  35673335 tatgaaatagaggattccatggttctaagtcaaatgcaatggaaagata 35673383  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 44782186 - 44782234
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44782186 tatgaattaaaggattccatggttctaggtcaaatgcaatggaaagata 44782234  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 46679809 - 46679761
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  46679809 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagata 46679761  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 10410905 - 10410857
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10410905 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagata 10410857  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 8081609 - 8081561
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  8081609 tatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagata 8081561  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 25725811 - 25725859
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  25725811 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagata 25725859  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 40382757 - 40382808
Alignment:
Q  202 tgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||||||||| ||||||||  || ||||||||||||||||||||||||||||    
T  40382757 tgatatgaatcaaaggattacattgttctaggtcaaatgcaatggaaagata 40382808  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 25506941 - 25506989
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||| ||| ||||||||||||||||||||    
T  25506941 tatgaataaaaggattccatggttttagatcaaatgcaatggaaagata 25506989  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 6742649 - 6742601
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||| ||||| || ||||||| ||||||||||||||||||||    
T  6742649 tatgaatcaaacgattccatagttctagatcaaatgcaatggaaagata 6742601  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 10412474 - 10412430
Alignment:
Q  209 aattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||||||||  |||||| ||||||||||||||| ||||||||    
T  10412474 aattaaaggatttcatggttttaggtcaaatgcaatcgaaagata 10412430  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 25502028 - 25502072
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaa 249  Q
    ||||||| | ||||||| |||||||||| ||||||||||||||||    
T  25502028 tatgaatcagaggattccatggttctagatcaaatgcaatggaaa 25502072  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 4847691 - 4847739
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4847691 tatgaattaaaggattccatggttctaggtcaaatgtaatggaaagata 4847739  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 28395556 - 28395604
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  28395556 tatgaatcaaaggattccatggttttaggtcaaatgcaatggaaagata 28395604  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 41874617 - 41874569
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  41874617 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagata 41874569  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 4602400 - 4602355
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaag 250  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  4602400 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 4602355  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 27682298 - 27682253
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaag 250  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  27682298 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 27682253  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28133827 - 28133782
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaag 250  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  28133827 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaag 28133782  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 14007846 - 14007799
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagat 252  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  14007846 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagat 14007799  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 45035267 - 45035214
Alignment:
Q  200 tctgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  45035267 tctgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagata 45035214  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 1015828 - 1015780
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  1015828 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagata 1015780  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 17308794 - 17308746
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||    
T  17308794 tatgaatcaaaggattccattgttctagatcaaatgcaatggaaagata 17308746  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 45033467 - 45033419
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||| ||||| |||||||||| ||||||||||||||||||||    
T  45033467 tatgaatcaaaagattccatggttctagatcaaatgcaatggaaagata 45033419  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 3372455 - 3372503
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||| ||||| || |||||||||||||| |||||||||||||    
T  3372455 tatgaatcaaaagattccatagttctaggtcaaatacaatggaaagata 3372503  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 15689141 - 15689093
Alignment:
Q  205 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  15689141 tatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagata 15689093  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 29924729 - 29924689
Alignment:
Q  213 aaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  29924729 aaaggattccatagttctaggtcaaatgcaatggaaagata 29924689  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 21464611 - 21464571
Alignment:
Q  213 aaaggattctatggttctaggtcaaatgcaatggaaagata 253  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  21464611 aaagaattccatggttctagatcaaatgcaatggaaagata 21464571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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