View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_101 (Length: 279)
Name: NF0547_low_101
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 39075571 - 39075652
Alignment:
| Q |
12 |
catgtgattgctgggaagtttaaattggggaggaaaattggaagtgggtcttttggggagctttatataggtttgtttcatg |
93 |
Q |
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| T |
39075571 |
catgtgattgctgggaagtttaaattggggaggaaaattggaagtgggtcttttggggagctttatataggtttgtttcatg |
39075652 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 39075745 - 39075826
Alignment:
| Q |
188 |
tatcagctgttaatgtacaaactggggaggaggttgctgttaagctggtatgttaagttctcatgaagttattagccctatg |
269 |
Q |
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| T |
39075745 |
tatcagctgttaatgtacaaactggggaggaggttgctgttaagctggtatgttaagttctcatgaagttattagccctatg |
39075826 |
T |
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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 46007524 - 46007581
Alignment:
| Q |
188 |
tatcagctgttaatgtacaaactggggaggaggttgctgttaagctggtatgttaagtt |
246 |
Q |
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| T |
46007524 |
tatcagctattaatatacaaactggagag-aggtggctgttaagctggtatgtgaagtt |
46007581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30380326 - 30380265
Alignment:
| Q |
188 |
tatcagctgttaatgtacaaactggggaggaggttgctgttaagctggtatgttaagttctc |
249 |
Q |
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| T |
30380326 |
tatcagctgttaatatacaaactggagaggaggtggctgttaagctggtatgtgaagttctc |
30380265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 30380507 - 30380431
Alignment:
| Q |
12 |
catgtgattgctgggaagtttaaattggggaggaaaattggaagtgggtcttttggggagctttatataggtttgtt |
88 |
Q |
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| T |
30380507 |
catgtgattggtggaaagtttaaacttggaaggaaaattgggagtggttcttttggagagctttatttaggtttgtt |
30380431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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