View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_104 (Length: 274)
Name: NF0547_low_104
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_104 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 39517976 - 39518188
Alignment:
| Q |
15 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39517976 |
tcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttggattcaggtg |
39518075 |
T |
|
| Q |
115 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggtagagcttatcaaaagtgctgtatcttgattttctc |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||| || |
|
|
| T |
39518076 |
ctatccccatt--acaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaaattgttgtatcttgactttgtc |
39518173 |
T |
|
| Q |
215 |
aaatccatcctcatc |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39518174 |
aaatccatcctcatc |
39518188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 32687438 - 32687516
Alignment:
| Q |
18 |
tctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttg |
96 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||| || | ||||| |||||||| || | |||||||||| |
|
|
| T |
32687438 |
tctccaacatctctgagtatgttggtaagctgatttgcaattcccaaggccaaggcagcattgtatacactctctgttg |
32687516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 17380468 - 17380680
Alignment:
| Q |
15 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
114 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| || ||||| || |||||||| || |||| ||| |
|
|
| T |
17380468 |
tcttctccaacgtctctaagtatgttggtaagttgattagcaatgccaagtgccaatgcagcattgtagatgctttcagttgaagcttttgattgtggtt |
17380567 |
T |
|
| Q |
115 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggtagagcttatcaaaagtgctgtatcttgattttctc |
214 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || || ||||||||||||||||| ||||| ||||| || | |||||| | ||||||||||||||||| |
|
|
| T |
17380568 |
ctatgcccatt--acaggaacactcataaggcccacagtcccagcaacatagtagcaatataggtatagttcatcaaagttattgtatcttgattttctc |
17380665 |
T |
|
| Q |
215 |
aaatccatcctcatc |
229 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
17380666 |
aggtccagcctcatc |
17380680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1323 times since January 2019
Visitors: 3667