View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_11 (Length: 567)
Name: NF0547_low_11
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 28 - 552
Target Start/End: Complemental strand, 28478018 - 28477494
Alignment:
| Q |
28 |
caccttcaatcgagatatcggtgctacatagtatgctaattacctcaagcggggttcctttgttattgaggggaagatcagctccaattccatttcctct |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
28478018 |
caccttcaatcgagatatgggtgctacatagtatgctaattacctcaagcggggttcctttgttatggagaggaagatcagctccaattccatttcctct |
28477919 |
T |
|
| Q |
128 |
tggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28477918 |
tggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccatgacaatcatgttg |
28477819 |
T |
|
| Q |
228 |
ggcaagcaagccatgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtt |
327 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28477818 |
ggcaagcaagccatgaaggtgatatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtt |
28477719 |
T |
|
| Q |
328 |
tttgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaacggcttgagaccttcagcggctaaccctgc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
28477718 |
tttgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaatggcttgagaccttcagtggctaaccctgc |
28477619 |
T |
|
| Q |
428 |
tgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgct |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28477618 |
tgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgct |
28477519 |
T |
|
| Q |
528 |
gcatgaattgccactatcttattgt |
552 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28477518 |
gcatgaattgccactatcttattgt |
28477494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 49 - 552
Target Start/End: Complemental strand, 28469655 - 28469155
Alignment:
| Q |
49 |
tgctacatagtatgctaattacctcaagcggggttcctttgttattgaggggaagatcagctccaattccatttcctcttggaaatctaaagcaacttgg |
148 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469655 |
tgctacatagtatgctaa---cctcaagcggggttcctttgttattaagaggaagattggctccaattccatttcctcttggaaatctaaagcaacttgg |
28469559 |
T |
|
| Q |
149 |
tctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttgggcaagcaagccatgaaagtg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
28469558 |
tctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccatgacaatcatgttgggcaagcaagccatgaaggtg |
28469459 |
T |
|
| Q |
249 |
atatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatgga |
348 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469458 |
atatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatgga |
28469359 |
T |
|
| Q |
349 |
ctacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaacggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttg |
448 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469358 |
ctacctgatcatatccgcgttgtaggaatgatgaataaatagcacaaaatggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttg |
28469259 |
T |
|
| Q |
449 |
ttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgctgcatgaattgccactatctta |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28469258 |
ttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttagaccagttccaccacccattgctgcatgaattgccactatctta |
28469159 |
T |
|
| Q |
549 |
ttgt |
552 |
Q |
| |
|
|||| |
|
|
| T |
28469158 |
ttgt |
28469155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 49713167 - 49713264
Alignment:
| Q |
168 |
gcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttgggcaagcaagccatgaaagtgatatcaaaagctccaca |
265 |
Q |
| |
|
||||| || ||||||| || |||||||| ||||||||||| ||||| |||||||| || || ||||| | |||||| || |||||||| |||||||| |
|
|
| T |
49713167 |
gcagtcgccaccatgtgcacaagttcagcctcatcagatggtgccatgacaatcatatttggtaagcatgacatgaacgttatatcaaatgctccaca |
49713264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 49147927 - 49147753
Alignment:
| Q |
141 |
caacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttgggcaagcaagcca |
240 |
Q |
| |
|
|||||||||| ||| || || || |||||||| |||||||||| || || ||||||||||| |||||||| || | ||||||||| | ||| |||| |
|
|
| T |
49147927 |
caacttggtcgatcgtcaatggccgctgcagtggcaaccatgtggcaaagctctgcttcatcagaaggagccatcaccaccatgttgggtaggcatgcca |
49147828 |
T |
|
| Q |
241 |
tgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatc |
315 |
Q |
| |
|
| ||||||| ||||||| ||| | || || || || |||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
49147827 |
taaaagtgacgtcaaaagaaccagagtgtgtaggaccgtctgatccaactaacccagctctgtccattgcaaatc |
49147753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 6864748 - 6864838
Alignment:
| Q |
384 |
taaatagcacaaaacggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatc |
474 |
Q |
| |
|
||||| || ||||| ||||| ||||||||| ||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
6864748 |
taaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatc |
6864838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1028 times since January 2019
Visitors: 3662