View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_113 (Length: 264)
Name: NF0547_low_113
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_113 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 32508226 - 32508430
Alignment:
| Q |
37 |
atattttatccatgcaccctcttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtga |
136 |
Q |
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| T |
32508226 |
atattttatccatgcaccctcttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtga |
32508325 |
T |
|
| Q |
137 |
tcaaacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaata |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32508326 |
tcaaacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataatttcacaaacttaatgcttgacacctaaata |
32508425 |
T |
|
| Q |
236 |
ttcat |
240 |
Q |
| |
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||||| |
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|
| T |
32508426 |
ttcat |
32508430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 32512844 - 32512949
Alignment:
| Q |
102 |
ctctatgacatattgatcataacaatgattggtgatcaaacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaa |
201 |
Q |
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|||||||| ||||||||| |||||| ||| ||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| || |
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| T |
32512844 |
ctctatgaaatattgatcttaacaaggatgggttatcaaacagataaagtgagtagcatgcatgaaattctagaaccaattaaacaatcctttagtacaa |
32512943 |
T |
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| Q |
202 |
ataatt |
207 |
Q |
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||||| |
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| T |
32512944 |
ttaatt |
32512949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 21903352 - 21903447
Alignment:
| Q |
146 |
taaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaatattcat |
240 |
Q |
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| T |
21903352 |
taaagtgaggagcgtgtatgaaattctagaaccaattaaacaatcctttagtacaaataatttcataagctttatgcttgacacctgaatattcat |
21903447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 21903195 - 21903245
Alignment:
| Q |
37 |
atattttatccatgcaccctcttgtattgctaacttcattattaataaaat |
87 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
21903195 |
atattttatccatgcaccctcttgtattgctcactttattattaataaaat |
21903245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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