View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_122 (Length: 257)
Name: NF0547_low_122
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 38090303 - 38090086
Alignment:
| Q |
12 |
atgaaggtgtgtttgggaaataggtaacttctgagattggattagaagattctgaatagagagaaagacactgaagaagggtattattggtattaatatt |
111 |
Q |
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| T |
38090303 |
atgaaggtgtgtttgggaaataggtaacttctgagattggattagaagattctgaatagagagaaagacactgaagaagggtattattggtattaatatt |
38090204 |
T |
|
| Q |
112 |
attatgttggagcagagaatctgaagaagacactggtactagaatgtggaatactaagaagaatggaacaagggatgctacaattgtatgcatcttaaca |
211 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38090203 |
attatgttggatcaaagaatctgaagaagacactggtactagaatgtggaatactaagaagaatggaacaagggatgctacaattgtatgcatcttaaca |
38090104 |
T |
|
| Q |
212 |
ggaaaaagattgagaatt |
229 |
Q |
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|||||||||||||||||| |
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| T |
38090103 |
ggaaaaagattgagaatt |
38090086 |
T |
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