View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_125 (Length: 252)
Name: NF0547_low_125
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_125 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 47060742 - 47060834
Alignment:
| Q |
153 |
ggttggcatattatctcaatcaagaaatttgagcagagaaaatgagtttcnnnnnnngtttctgccaattttcttcgcacctaagaataatct |
245 |
Q |
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| T |
47060742 |
ggttggcatattatctcaatcaagaaatttgagcagagaaaatgagtttctttttttgtttctgccaattttcttcacacgtaagaataatct |
47060834 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 47060605 - 47060675
Alignment:
| Q |
16 |
gccaagaagtctcgccactttctattagtagatacaaatannnnnnnnnaaagaagatacatatatttatt |
86 |
Q |
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| T |
47060605 |
gccaagaagtctcgccactttctattagtagatacaaatatatttttttaaagaagatacatatatttatt |
47060675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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