View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_126 (Length: 252)

Name: NF0547_low_126
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_126
NF0547_low_126
[»] chr1 (13 HSPs)
chr1 (23-151)||(43473131-43473259)
chr1 (72-150)||(32035195-32035273)
chr1 (72-145)||(32035335-32035408)
chr1 (77-150)||(41770963-41771036)
chr1 (74-134)||(35078079-35078139)
chr1 (70-150)||(39313411-39313491)
chr1 (77-150)||(7731252-7731325)
chr1 (77-150)||(37392464-37392537)
chr1 (72-151)||(7731520-7731600)
chr1 (70-118)||(15142515-15142563)
chr1 (72-136)||(29700529-29700593)
chr1 (72-120)||(31238664-31238712)
chr1 (72-151)||(37392189-37392269)
[»] chr5 (9 HSPs)
chr5 (71-151)||(42859116-42859196)
chr5 (71-150)||(13861252-13861331)
chr5 (77-150)||(20405276-20405348)
chr5 (77-150)||(34992093-34992166)
chr5 (75-150)||(22497269-22497344)
chr5 (71-150)||(22554030-22554109)
chr5 (99-135)||(21112002-21112038)
chr5 (71-150)||(31289767-31289846)
chr5 (70-131)||(22498860-22498921)
[»] chr6 (2 HSPs)
chr6 (71-123)||(14911448-14911500)
chr6 (70-132)||(11527452-11527514)
[»] chr8 (2 HSPs)
chr8 (67-150)||(32094985-32095068)
chr8 (72-151)||(37745142-37745221)
[»] chr7 (9 HSPs)
chr7 (77-151)||(19628881-19628955)
chr7 (77-151)||(46735897-46735971)
chr7 (77-151)||(46736531-46736605)
chr7 (77-150)||(46369854-46369927)
chr7 (72-150)||(29530611-29530689)
chr7 (77-130)||(21690145-21690198)
chr7 (70-150)||(42586331-42586411)
chr7 (72-151)||(46370122-46370204)
chr7 (77-151)||(7668136-7668210)
[»] chr2 (6 HSPs)
chr2 (77-151)||(347675-347749)
chr2 (77-151)||(348297-348371)
chr2 (77-127)||(13844583-13844631)
chr2 (71-126)||(20630093-20630148)
chr2 (81-151)||(5602277-5602347)
chr2 (70-126)||(20002118-20002174)
[»] chr4 (7 HSPs)
chr4 (71-124)||(33881562-33881615)
chr4 (77-151)||(14203929-14204003)
chr4 (77-150)||(37082433-37082506)
chr4 (72-151)||(14204555-14204633)
chr4 (74-150)||(2491653-2491729)
chr4 (71-118)||(24551282-24551329)
chr4 (70-150)||(44469022-44469102)
[»] chr3 (10 HSPs)
chr3 (85-150)||(26243367-26243432)
chr3 (77-150)||(4333914-4333987)
chr3 (77-150)||(21631163-21631236)
chr3 (85-150)||(26121184-26121249)
chr3 (72-151)||(12012249-12012328)
chr3 (77-150)||(42371340-42371413)
chr3 (70-150)||(13661617-13661697)
chr3 (68-130)||(32981277-32981339)
chr3 (71-147)||(4148608-4148684)
chr3 (71-131)||(32981594-32981654)
[»] scaffold2013 (1 HSPs)
scaffold2013 (77-150)||(499-572)
[»] scaffold0257 (1 HSPs)
scaffold0257 (71-125)||(21617-21671)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 43473259 - 43473131
Alignment:
Q  23 atcaataaaaaatattttattccttaattatnnnnnnnnnccagttttatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcc 122  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43473259 atcaataaaaaatattttattccttaattataaaaaaaaatcagttttatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcc 43473160  T
Q  123 tttttaaaaatcattatcttcttaatttc 151  Q
    |||||||||||||||||||||||||||||    
T  43473159 tttttaaaaatcattatcttcttaatttc 43473131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 32035273 - 32035195
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||| ||||||||||||||||||| |||||  |||||||| |||||||||||||||||||  ||| |||||||||||||    
T  32035273 tctattaacaatatataaaaatcgcactcctccaaaatttcataattgtcctttttaaaacccatgatcttcttaattt 32035195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 32035408 - 32035335
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttctt 145  Q
    ||||||||||||||||||||||| || | |||||||| || |||||||||||||||||||  ||| ||||||||    
T  32035408 tctactaacaatatataaaaatcatatttcagcaaaaattcataattgtcctttttaaaacccataatcttctt 32035335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 41770963 - 41771036
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  41770963 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 41771036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 35078079 - 35078139
Alignment:
Q  74 tactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatc 134  Q
    |||||||||||||||||| || ||| ||| |||||||||||| ||||||||||| ||||||    
T  35078079 tactaacaatatataaaattcataccccaccaaaattttatagttgtccttttttaaaatc 35078139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 39313491 - 39313411
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||||||||||||||| | ||||  ||||||| ||||  |||||| |||||| | ||||||| ||||||||    
T  39313491 tatctactaacaatatataaaaatcgaaatccaataaaatttcataaccgtccttattaaaactaattatctccttaattt 39313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 7731325 - 7731252
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | || | |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  7731325 taacaatatataaaaatcaaagtctaccaaaatttcataataatccttattaaaactcattatcttcttaattt 7731252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 37392464 - 37392537
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | || | |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  37392464 taacaatatataaaaatcaaagtctaccaaaatttcataataatccttattaaaactcattatcttcttaattt 37392537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 7731600 - 7731520
Alignment:
Q  72 tctactaacaatatataaa-aatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||| | ||||| | |||  |||||||||||||  |||||| |||||| ||| |||||||||||||||    
T  7731600 tctactaacaatatatatataatcgaagtccttcaaaattttataaccgtccttattaaaattcactatcttcttaatttc 7731520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 15142515 - 15142563
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataatt 118  Q
    ||||||||||||||||||||||||||| ||| || ||| ||||||||||    
T  15142515 tatctactaacaatatataaaaatcgttctcgaggaaatttttataatt 15142563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 29700593 - 29700529
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcat 136  Q
    |||||||||||||||||||||||| | |  | |||||||| |||||| ||||| |||||| ||||    
T  29700593 tctactaacaatatataaaaatcgaagtttaacaaaatttcataattttccttgttaaaactcat 29700529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 31238712 - 31238664
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgt 120  Q
    |||||| ||| |||||||||||||||||| | |||| ||||||||||||    
T  31238712 tctactgacagtatataaaaatcgtactcaaacaaatttttataattgt 31238664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 37392189 - 37392269
Alignment:
Q  72 tctactaacaatatataaa-aatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||| | ||||| | |||  |||||||| ||||  |||||| |||||| ||| |||||||||||||||    
T  37392189 tctactaacaatatatatataatcgaagtccttcaaaatttcataaccgtccttattaaaattcactatcttcttaatttc 37392269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 42859196 - 42859116
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||||||||| | || |||||||||||| |||  |||||||||||| ||||||||| |||||||||    
T  42859196 atctactaacaatatataaaaatcgaagtctagcaaaattttacaatcctcctttttaaaactcattatctccttaatttc 42859116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 13861331 - 13861252
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||||||||| | | ||||||||||| ||||||||| ||  ||||| |||| |||| ||||||||    
T  13861331 atctactaacaatatataaaaatcgaagttcagcaaaatttcataattgtctttaataaaattcatgatctccttaattt 13861252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 20405348 - 20405276
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||||||| || |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  20405348 taacaatatataaaaatc-tagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 20405276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 34992093 - 34992166
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  34992093 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 34992166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 22497344 - 22497269
Alignment:
Q  75 actaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||| | | | || ||||||||||||||||||||| |||||| |||| ||||  |||||||    
T  22497344 actaacaatatataaaaattgaagtacaacaaaattttataattgtccttattaaaactcatgatctctttaattt 22497269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 22554030 - 22554109
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||  |||||  ||| |||| ||||||||    
T  22554030 atctactaacaatatataaaaatcgaagtccagaaaaatttcataatagtccttactaaaacacataatctccttaattt 22554109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 21112002 - 21112038
Alignment:
Q  99 tccagcaaaattttataattgtcctttttaaaaatca 135  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21112002 tccaacaaaattttataattgtcctttttaaaaatca 21112038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 31289767 - 31289846
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||| ||||||||| | | |||||  |||||||||||| |||||| |||||| |||  |||| ||||||||    
T  31289767 atctactaacaatttataaaaattgaagtccagtgaaattttataatcgtccttattaaaactcaagatctccttaattt 31289846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 22498921 - 22498860
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaa 131  Q
    ||||||||||||||| |||||||||| | | || |||||||| || ||||||||| ||||||    
T  22498921 tatctactaacaataaataaaaatcgaagtacaacaaaatttcatcattgtccttattaaaa 22498860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 14911500 - 14911448
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcct 123  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  14911500 atctactaacaatatataaaaatcgaagtccagcaaaattttataattgtcct 14911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 11527514 - 11527452
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaa 132  Q
    |||||||||||||||||| |||||||||| | |||||| |  |||||| |||| |||||||||    
T  11527514 tatctactaacaatatatgaaaatcgtaccctagcaaattcctataatcgtccattttaaaaa 11527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 32094985 - 32095068
Alignment:
Q  67 ttttatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| ||||| ||| || |||||| |||| |||| ||||||||    
T  32094985 ttttatctactaacaatatataaaaatcaaagtccagcaaaatttcataatagtctttattaaaactcatgatctccttaattt 32095068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 37745142 - 37745221
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    |||||||||||||||||||||||  | |||| |||||||| ||| | |||||| |||||| |||||||||||||||||||    
T  37745142 tctactaacaatatataaaaatcaaagtccaccaaaatttcatagtcgtccttattaaaactcattatcttcttaatttc 37745221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 19628881 - 19628955
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  19628881 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 19628955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 46735971 - 46735897
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  46735971 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 46735897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 46736605 - 46736531
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  46736605 taacaatatataaaaatcaaagtccaccaaaatttaataataatccttattaaaactcattatcttcttaatttc 46736531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 46369927 - 46369854
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  46369927 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 46369854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 29530689 - 29530611
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||||||||||||  | |  |||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  29530689 tctactaacaatatataaaaatcaaagtaaagcaaaatttcataatcgtccttattaaaactcatgatctccttaattt 29530611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 21690145 - 21690198
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaa 130  Q
    ||||||||||||||||||||| ||||   |||||||||||||||| ||||||||    
T  21690145 taacaatatataaaaatcgtagtccatttaaattttataattgtcttttttaaa 21690198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 42586411 - 42586331
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||| ||||||||||||||||||| | || |||||||||| ||||| || ||| |||||| ||||  ||| ||||||||    
T  42586411 tatctattaacaatatataaaaatcgaagtctagcaaaatttaataatcgttcttattaaaactcatgttctccttaattt 42586331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 46370204 - 46370122
Alignment:
Q  72 tctactaacaatatata---aaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    |||||||||||||||||   ||||||| | |||  |||||||| ||||| |||||| |||||| ||| |||||||||||||||    
T  46370204 tctactaacaatatatatataaaatcgaagtccttcaaaatttcataatcgtccttattaaaattcactatcttcttaatttc 46370122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 7668210 - 7668136
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||| |||||||||   | |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  7668210 taacaatctataaaaattaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttc 7668136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 347675 - 347749
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| ||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  347675 taacaatatataaaaatcaaagtccaccaaaattttataataatccttattaaaactcattatcttcttaatttc 347749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 348297 - 348371
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| |||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  348297 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaatttc 348371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 13844631 - 13844583
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtccttttt 127  Q
    ||||||||||||||||| |||||  | ||||||||||||||||||||||||    
T  13844631 taacaatatataaaaattgtact--aacaaaattttataattgtccttttt 13844583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 20630148 - 20630093
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttt 126  Q
    ||||||||||||||| |||||||||||   ||| ||| ||||||||||||||||||    
T  20630148 atctactaacaatatgtaaaaatcgtatagcagtaaatttttataattgtcctttt 20630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 5602277 - 5602347
Alignment:
Q  81 aatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||  | |||| |||||||| ||||  |||||| |||||| ||||||||||||| |||||    
T  5602277 aatatataaaaatcaaagtccaccaaaatttcataaccgtccttattaaaactcattatcttctttatttc 5602347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 20002118 - 20002174
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttt 126  Q
    |||||||||| | ||||||||||| |||||||| |||||||  |||||||| |||||    
T  20002118 tatctactaatagtatataaaaattgtactccaccaaaattacataattgttctttt 20002174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 33881562 - 33881615
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctt 124  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  33881562 atctactaacaatatataaaaatcgttctccaacaaaatttcataattgtcctt 33881615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 14203929 - 14204003
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| |||||||||||||||||||    
T  14203929 taacaatatataaaaatcaaagtccatcaaaatttcataataatccttattaaaactcattatcttcttaatttc 14204003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 37082433 - 37082506
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  37082433 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 37082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 14204555 - 14204633
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    ||||||||||||| |||||||||  | |||| |||||||| ||||| ||| || |||||| |||||||||||||||||||    
T  14204555 tctactaacaata-ataaaaatcaaagtccaccaaaatttcataatcgtctttattaaaactcattatcttcttaatttc 14204633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 2491653 - 2491729
Alignment:
Q  74 tactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||||||||||| | | || |||||||| ||||| |||||| |||||| | || |||| ||||||||    
T  2491653 tactaacaatatataaaaatcgaagtacaccaaaatttcataatcgtccttattaaaattaatgatctccttaattt 2491729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 24551329 - 24551282
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataatt 118  Q
    ||||||||||||||||||||||| |||||||| |||| | ||||||||    
T  24551329 atctactaacaatatataaaaattgtactccaacaaattcttataatt 24551282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 44469102 - 44469022
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||||||| ||| | | | | ||||||||||| ||||| ||||| ||||||| |||| |||  ||||||||    
T  44469102 tatctactaacaatatatgaaagttgaagtacagcaaaatttcataatcgtcctatttaaaactcatgatcaccttaattt 44469022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 26243432 - 26243367
Alignment:
Q  85 tataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||| |||||| | |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  26243432 tataaaaattgtactctaacaaattttcataattgtcctttttaaaaatcattatcttctcaattt 26243367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 4333914 - 4333987
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  4333914 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 4333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 21631163 - 21631236
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| ||||||||||||||||||    
T  21631163 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaattt 21631236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 26121249 - 26121184
Alignment:
Q  85 tataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  26121249 tataaaaattgtactctaacaaattttcataattgtcctttttgaaaatcattatcttctcaattt 26121184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 12012249 - 12012328
Alignment:
Q  72 tctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttc 151  Q
    |||||||||||||||||||||| | | || |||||||||| |||||  ||||  |||||| ||||||||| |||||||||    
T  12012249 tctactaacaatatataaaaattgaagtctagcaaaatttcataatcctcctaattaaaactcattatctccttaatttc 12012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 42371413 - 42371340
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||||||| |||||  ||||| |||||| || |||||||||||||||    
T  42371413 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcgttatcttcttaattt 42371340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 13661617 - 13661697
Alignment:
Q  70 tatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    |||||||||||||| ||||||||||| | ||||||||||||| ||| | || ||| |||||| |||| ||||  |||||||    
T  13661617 tatctactaacaatgtataaaaatcgaagtccagcaaaatttcatattcgttcttattaaaactcatgatctctttaattt 13661697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 32981339 - 32981277
Alignment:
Q  68 tttatctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaa 130  Q
    |||||||||||||||||||||||||||| | |||   ||||||| || ||||||||| |||||    
T  32981339 tttatctactaacaatatataaaaatcgaagtcctttaaaatttcatgattgtccttattaaa 32981277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 4148684 - 4148608
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaa 147  Q
    |||||| |||||||||||||| | | | | ||  ||||||| ||||||||||| ||||||| |||| ||||||||||    
T  4148684 atctacaaacaatatataaaagttgaagtacaataaaatttcataattgtcctctttaaaactcatgatcttcttaa 4148608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 32981654 - 32981594
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaa 131  Q
    ||||||||||||||||||||||| | | |||| |||||||| ||||| ||| || ||||||    
T  32981654 atctactaacaatatataaaaattgcaatccatcaaaatttcataatcgtctttattaaaa 32981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 499 - 572
Alignment:
Q  77 taacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaattt 150  Q
    ||||||||||||||||||  | |||| |||| ||| |||||  ||||| |||||| ||||||||||||||||||    
T  499 taacaatatataaaaatcaaagtccaccaaattttcataataatccttattaaaactcattatcttcttaattt 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 21617 - 21671
Alignment:
Q  71 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtccttt 125  Q
    ||||||| ||| ||||||||||| ||||| || |||| |||||||||||||||||    
T  21617 atctactgacattatataaaaattgtactacaacaaatttttataattgtccttt 21671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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